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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX96432
CDY35917
CDY40468

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G40330.1 CDX72943 AT1G72770.1 19407142
AT2G40330.1 CDX96432 AT1G72770.1 19407142
AT2G40330.1 CDX72943 AT1G72770.1 19624469
AT2G40330.1 CDX96432 AT1G72770.1 19624469
AT2G40330.1 CDY35917 AT2G20000.1 17944809
AT2G40330.1 CDY40468 AT2G20000.1 17944809
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra004967.1-P Field mustard mitochondrion 98.58 98.58
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 96.23 96.23
CDY52923 Canola cytosol 84.43 87.32
CDX93191 Canola cytosol 83.49 87.19
AT2G40330.1 Thale cress cytosol 86.79 85.58
CDY24911 Canola cytosol, mitochondrion 82.55 82.16
CDY07608 Canola cytosol, mitochondrion 82.08 82.08
Solyc05g052420.1.1 Tomato cytosol 22.64 58.54
PGSC0003DMT400053102 Potato cytosol, plastid 55.19 58.21
PGSC0003DMT400053119 Potato cytosol, plastid 55.19 58.21
PGSC0003DMT400053120 Potato cytosol, plastid 55.19 58.21
Solyc03g095780.1.1 Tomato plastid 54.72 57.71
TraesCS4A01G114400.1 Wheat cytosol 48.58 57.54
CDY18391 Canola plastid 54.72 56.86
CDY54415 Canola cytosol 54.72 56.86
KRH73249 Soybean plastid 55.66 56.73
CDY14471 Canola plastid 55.19 56.52
CDY07739 Canola plastid 55.19 56.52
CDX91449 Canola plastid 55.19 56.52
TraesCS1B01G306800.1 Wheat mitochondrion 51.42 56.19
CDY54453 Canola plastid 54.25 55.29
CDY68675 Canola cytosol 41.98 54.94
CDY58053 Canola cytosol 41.98 54.94
TraesCS1A01G297600.1 Wheat mitochondrion 51.89 54.73
HORVU1Hr1G070420.1 Barley mitochondrion 51.89 54.73
PGSC0003DMT400069734 Potato mitochondrion, plastid 53.3 54.33
TraesCS1D01G293600.1 Wheat mitochondrion, plastid 51.42 54.23
Zm00001d038436_P001 Maize plastid 50.47 53.5
KRH14908 Soybean plastid 54.72 53.21
PGSC0003DMT400061535 Potato plastid 54.72 53.21
TraesCS3B01G380300.1 Wheat mitochondrion, plastid 51.89 53.14
TraesCS3A01G348400.1 Wheat plastid 50.94 52.43
GSMUA_Achr6P32790_001 Banana cytosol 51.89 52.13
HORVU3Hr1G088100.1 Barley plastid 50.47 51.94
TraesCS3D01G342000.1 Wheat plastid 50.47 51.94
HORVU3Hr1G039010.1 Barley plastid 50.47 51.94
GSMUA_Achr9P04600_001 Banana cytosol 34.91 51.75
Zm00001d043014_P001 Maize cytosol 51.89 51.64
Os05t0473000-01 Rice cytosol 52.83 51.61
CDY04951 Canola cytosol 47.64 51.27
CDY72318 Canola cytosol 49.06 51.23
CDX80959 Canola cytosol 49.06 51.23
CDX98844 Canola cytosol 49.06 50.98
CDX70150 Canola cytosol 48.58 50.49
TraesCS2D01G087500.1 Wheat plastid 50.94 50.47
TraesCS2B01G105300.1 Wheat plastid 51.42 50.23
GSMUA_AchrUn_... Banana plastid 37.26 50.0
GSMUA_Achr9P17980_001 Banana cytosol 34.91 49.66
EES19683 Sorghum plastid 50.47 49.54
CDY58019 Canola cytosol 38.21 48.8
CDX78879 Canola cytosol 38.21 48.8
CDX99450 Canola cytosol 38.21 48.8
TraesCS4B01G189800.1 Wheat cytosol 51.42 48.66
TraesCS4D01G191200.1 Wheat cytosol 51.42 48.66
HORVU4Hr1G055220.1 Barley cytosol 50.94 48.21
EER92405 Sorghum plastid 50.47 48.2
Zm00001d047705_P001 Maize plastid 49.53 48.17
GSMUA_Achr5P29490_001 Banana plastid 36.32 47.53
GSMUA_Achr11P... Banana cytosol, plastid 34.91 46.84
Zm00001d028793_P001 Maize cytosol, mitochondrion, plastid 48.58 46.82
Os03t0297600-01 Rice cytosol 50.47 46.72
CDY11503 Canola cytosol 40.57 45.74
CDX76731 Canola cytosol 40.09 45.21
Os01t0827800-00 Rice plastid 53.77 44.53
KRH31193 Soybean cytosol, golgi, plastid 53.77 44.36
GSMUA_Achr8P21220_001 Banana cytosol 35.38 44.12
CDY53905 Canola cytosol 37.74 42.78
CDX90028 Canola cytosol 37.74 42.55
Solyc06g050500.2.1 Tomato plastid 55.19 42.55
CDY70860 Canola cytosol 37.26 42.47
CDX90440 Canola cytosol 38.21 42.41
CDY01498 Canola cytosol 38.21 42.41
CDY15183 Canola cytosol 37.26 42.25
CDY25052 Canola cytosol 37.26 42.25
CDX89219 Canola cytosol 36.79 42.16
CDY04688 Canola cytosol 36.79 41.94
CDY69797 Canola cytosol 37.26 41.36
CDY49462 Canola cytosol 35.38 40.76
CDY61488 Canola cytosol 35.38 40.76
CDY70517 Canola cytosol 35.38 40.54
CDY64350 Canola cytosol 34.91 40.44
CDX96197 Canola cytosol 35.85 40.43
CDY38728 Canola cytosol 34.91 40.22
CDY22516 Canola plastid 38.21 39.51
CDX82120 Canola plastid 38.21 39.51
CDY48030 Canola plastid 38.21 39.51
CDY27022 Canola cytosol 34.91 39.36
CDY68316 Canola nucleus 35.38 39.27
CDY58505 Canola nucleus 38.68 39.05
GSMUA_Achr10P... Banana cytosol, plastid 36.32 38.89
CDX74368 Canola cytosol 35.38 38.86
CDY03194 Canola nucleus 34.91 38.74
CDX77691 Canola nucleus 39.15 38.6
OQU87775 Sorghum endoplasmic reticulum, extracellular 49.53 38.6
CDX91871 Canola cytosol 34.91 38.34
TraesCS2A01G089400.1 Wheat plastid 50.94 37.76
CDY08877 Canola cytosol 26.42 36.13
CDX76554 Canola cytosol 26.42 36.13
Zm00001d012475_P001 Maize cytosol 50.47 34.29
CDY07165 Canola cytosol 8.96 31.67
Protein Annotations
EnsemblPlants:CDX74796EnsemblPlantsGene:GSBRNA2T00116769001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF3PFAM:PF10604ProteinID:CDX74796ProteinID:CDX74796.1SEG:seg
SUPFAM:SSF55961UniParc:UPI0004EDEFA6MapMan:11.1.2.1.1.1:::
Description
BnaA05g05420D
Coordinates
chrLK031802:+:643971..644609
Molecular Weight (calculated)
23484.6 Da
IEP (calculated)
7.033
GRAVY (calculated)
-0.321
Length
212 amino acids
Sequence
(BLAST)
001: MPTSLQFQRS SSAAETSNAT VSSYHHHHKQ IHKVSLTRGM ADVPEHVEIF HTHVVGPYQC FSVVVQDVDA SASAVWSILS RFEHPQAYKH FVKSCHVAVG
101: DGREVGSVRE VRVVSGLPAA FSLERLEIMD DDRHVISFSV VGGDHRLQNY RSVTTVHECS STEDGKKRAR VVESYVVDVP AGNDKEETCS FADTIVRCNL
201: QSLAKLAENK PK
Best Arabidopsis Sequence Match ( AT2G40330.1 )
(BLAST)
001: MPTSIQFQRS STAAEAANAT VRNYPHHHQK QVQKVSLTRG MADVPEHVEL SHTHVVGPSQ CFSVVVQDVE APVSTVWSIL SRFEHPQAYK HFVKSCHVVI
101: GDGREVGSVR EVRVVSGLPA AFSLERLEIM DDDRHVISFS VVGGDHRLMN YKSVTTVHES EEDSDGKKRT RVVESYVVDV PAGNDKEETC SFADTIVRCN
201: LQSLAKLAEN TSKFS
Arabidopsis Description
PYL6Abscisic acid receptor PYL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8E3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.