CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72943
CDX76528
CDX76554
CDX78840
CDX80307
CDX89368
CDX90405
CDX90440
CDX92752
CDX94382
CDX96432
CDX99476
CDY01017
CDY01456
CDY01498
CDY01532
CDY08530
CDY08877
CDY12785
CDY14318
CDY33008
CDY34065
CDY38260
CDY42756
CDY50002
CDY50003
CDY54381
CDY67227
CDY67257
CDY69797
CDY70860

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17870.1	CDX72943	AT1G72770.1	19407142
AT4G17870.1	CDX96432	AT1G72770.1	19407142
AT4G17870.1	CDX72943	AT1G72770.1	19624469
AT4G17870.1	CDX96432	AT1G72770.1	19624469
AT4G17870.1	CDX72943	AT1G72770.1	21847091
AT4G17870.1	CDX96432	AT1G72770.1	21847091
AT4G17870.1	CDY01017	AT3G11410.1	19407142
AT4G17870.1	CDY08530	AT3G11410.1	19407142
AT4G17870.1	CDY67227	AT3G11410.1	19407142
AT4G17870.1	CDY67257	AT3G11410.1	19407142
AT4G17870.1	CDX76554	AT4G17870.1	21847091
AT4G17870.1	CDX90440	AT4G17870.1	21847091
AT4G17870.1	CDY01498	AT4G17870.1	21847091
AT4G17870.1	CDY08877	AT4G17870.1	21847091
AT4G17870.1	CDY69797	AT4G17870.1	21847091
AT4G17870.1	CDY70860	AT4G17870.1	21847091
AT4G17870.1	CDX76528	AT4G18340.1	19407142
AT4G17870.1	CDX78840	AT4G18340.1	19407142
AT4G17870.1	CDX90405	AT4G18340.1	19407142
AT4G17870.1	CDX99476	AT4G18340.1	19407142
AT4G17870.1	CDY01532	AT4G18340.1	19407142
AT4G17870.1	CDY34065	AT4G18340.1	19407142
AT4G17870.1	CDX89368	AT4G26080.1	19407142
AT4G17870.1	CDX92752	AT4G26080.1	19407142
AT4G17870.1	CDX94382	AT4G26080.1	19407142
AT4G17870.1	CDY14318	AT4G26080.1	19407142
AT4G17870.1	CDY42756	AT4G26080.1	19407142
AT4G17870.1	CDY50002	AT4G26080.1	19407142
AT4G17870.1	CDY50003	AT4G26080.1	19407142
AT4G17870.1	CDX89368	AT4G26080.1	19874541
AT4G17870.1	CDX92752	AT4G26080.1	19874541
AT4G17870.1	CDX94382	AT4G26080.1	19874541
AT4G17870.1	CDY14318	AT4G26080.1	19874541
AT4G17870.1	CDY42756	AT4G26080.1	19874541
AT4G17870.1	CDY50002	AT4G26080.1	19874541
AT4G17870.1	CDY50003	AT4G26080.1	19874541
AT4G17870.1	CDY38260	AT5G57050.1	19407142
AT4G17870.1	CDY54381	AT5G57050.1	19407142
AT4G17870.1	CDX80307	AT5G59220.1	19407142
AT4G17870.1	CDY33008	AT5G59220.1	19407142
AT4G17870.1	CDY01456	AT5G66880.1	19874541
AT4G17870.1	CDY12785	AT5G66880.1	19874541

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70860	Canola	cytosol	92.67	95.16
CDX76554	Canola	cytosol	75.39	92.9
CDY08877	Canola	cytosol	74.87	92.26
CDY01498	Canola	cytosol	92.15	92.15
CDX90440	Canola	cytosol	91.62	91.62
AT4G17870.1	Thale cress	cytosol	89.53	89.53
CDY58505	Canola	nucleus	77.49	70.48
CDX77691	Canola	nucleus	77.49	68.84
CDY68316	Canola	nucleus	67.54	67.54
CDY03194	Canola	nucleus	67.54	67.54
Solyc06g061180.1.1	Tomato	nucleus	70.16	62.91
PGSC0003DMT400005378	Potato	nucleus	69.63	62.44
KRH45453	Soybean	cytosol	67.02	60.38
KRH75621	Soybean	cytosol	65.97	58.88
GSMUA_Achr4P19170_001	Banana	cytosol	59.69	58.76
GSMUA_Achr8P14780_001	Banana	cytosol	60.21	55.83
VIT_02s0012g01270.t01	Wine grape	cytosol	75.92	54.92
CDX76731	Canola	cytosol	53.93	54.79
CDY11503	Canola	cytosol	52.88	53.72
Zm00001d047037_P001	Maize	cytosol	57.07	53.17
TraesCS1A01G191700.1	Wheat	cytosol	58.64	53.08
Zm00001d030045_P001	Maize	cytosol	58.64	52.83
TraesCS1D01G195300.1	Wheat	cytosol	58.64	52.58
TraesCS1B01G206600.1	Wheat	cytosol, unclear	58.12	52.11
Os10t0573400-01	Rice	plasma membrane	57.59	51.89
OQU92088	Sorghum	cytosol	57.07	51.42
CDY58053	Canola	cytosol	41.36	48.77
CDY68675	Canola	cytosol	41.36	48.77
CDY58019	Canola	cytosol	39.27	45.18
CDX78879	Canola	cytosol	39.27	45.18
CDX82120	Canola	plastid	48.17	44.88
CDY22516	Canola	plastid	48.17	44.88
CDY48030	Canola	plastid	48.17	44.88
CDY54415	Canola	cytosol	47.64	44.61
CDY18391	Canola	plastid	47.64	44.61
CDX99450	Canola	cytosol	38.74	44.58
CDX91449	Canola	plastid	47.64	43.96
CDY54453	Canola	plastid	47.64	43.75
CDY49462	Canola	cytosol	41.88	43.48
CDY07739	Canola	plastid	47.12	43.48
CDY14471	Canola	plastid	47.12	43.48
CDY61488	Canola	cytosol	41.88	43.48
CDY64350	Canola	cytosol	41.36	43.17
CDY38728	Canola	cytosol	41.36	42.93
CDY25052	Canola	cytosol	41.88	42.78
CDY04951	Canola	cytosol	43.98	42.64
CDY53905	Canola	cytosol	40.84	41.71
CDX90028	Canola	cytosol	40.84	41.49
CDY04688	Canola	cytosol	40.31	41.4
CDY15183	Canola	cytosol	40.31	41.18
CDY70517	Canola	cytosol	39.79	41.08
CDX74368	Canola	cytosol	41.36	40.93
CDX70150	Canola	cytosol	43.46	40.69
CDX98844	Canola	cytosol	43.46	40.69
CDX89219	Canola	cytosol	39.27	40.54
HORVU1Hr1G050110.1	Barley	plastid	58.12	40.51
CDX96197	Canola	cytosol	39.79	40.43
CDX91871	Canola	cytosol	40.84	40.41
CDY72318	Canola	cytosol	42.93	40.39
CDY27022	Canola	cytosol	39.27	39.89
CDX80959	Canola	cytosol	41.88	39.41
CDX93191	Canola	cytosol	41.88	39.41
CDY52923	Canola	cytosol	41.88	39.02
CDX74796	Canola	cytosol, nucleus, plastid	41.36	37.26
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	40.84	36.79
CDY07165	Canola	cytosol	10.99	35.0
CDY07608	Canola	cytosol, mitochondrion	38.74	34.91
CDY24911	Canola	cytosol, mitochondrion	38.74	34.74
VIT_04s0008g00270.t01	Wine grape	cytosol	35.6	23.45
VIT_08s0058g00230.t01	Wine grape	plastid	35.08	20.81
VIT_13s0175g00110.t01	Wine grape	plastid	6.28	11.32

Protein Annotations

EnsemblPlants:CDY69797	EnsemblPlantsGene:GSBRNA2T00092499001	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF6	PFAM:PF10604	ProteinID:CDY69797	ProteinID:CDY69797.1	SUPFAM:SSF55961
UniParc:UPI0004EC03B3	UniProt:A0A078JW86	MapMan:11.1.2.1.1.1	:	:	:

Description

BnaCnng65400DBnaCnng65400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JW86]

Coordinates

chrLK040358:+:1455..2255

Molecular Weight (calculated)

21688.7 Da

IEP (calculated)

6.882

GRAVY (calculated)

-0.504

Length

191 amino acids

Sequence
(BLAST)

001: MPSELTQEER SKLTQSISEF HTYHLGPGSC SSLHAQRIHA PPEIVWSVVR QFDKPQTYKH FIKSCSVEEG FEMRVGCTRD VIVISGLPAN TSTERLDMLD
101: DERRVTGFSI IGGEHRLKNY KSVTTVHRFE RERRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVTEAMAR NAGDGRGSRV T

Best Arabidopsis Sequence Match ( AT4G17870.1 )
(BLAST)

001: MPSELTPEER SELKNSIAEF HTYQLDPGSC SSLHAQRIHA PPELVWSIVR RFDKPQTYKH FIKSCSVEQN FEMRVGCTRD VIVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KENRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVAEAMAR NSGDGSGSQV T

Arabidopsis Description

PYR1Abscisic acid receptor PYR1 [Source:UniProtKB/Swiss-Prot;Acc:O49686]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.