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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, vacuole
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX76554
CDX90440
CDY01498
CDY07739
CDY08877
CDY14471
CDY69797
CDY70860

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18340.1 CDY07739 AT2G38310.1 19407142
AT4G18340.1 CDY14471 AT2G38310.1 19407142
AT4G18340.1 CDX76554 AT4G17870.1 19407142
AT4G18340.1 CDX90440 AT4G17870.1 19407142
AT4G18340.1 CDY01498 AT4G17870.1 19407142
AT4G18340.1 CDY08877 AT4G17870.1 19407142
AT4G18340.1 CDY69797 AT4G17870.1 19407142
AT4G18340.1 CDY70860 AT4G17870.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76528 Canola extracellular, vacuole 96.29 98.23
CDY01532 Canola vacuole 87.13 88.67
CDX90405 Canola vacuole 86.88 88.41
CDX99476 Canola vacuole 86.88 87.53
CDX78840 Canola vacuole 86.63 87.28
AT4G18340.1 Thale cress vacuole 85.4 86.9
CDX99881 Canola extracellular, vacuole 57.67 61.64
CDY26296 Canola extracellular, plasma membrane, vacuole 59.16 59.9
CDX90225 Canola vacuole 59.9 59.75
KRH21069 Soybean vacuole 57.67 58.4
KRH11184 Soybean endoplasmic reticulum, extracellular, vacuole 57.43 58.29
KRG89350 Soybean extracellular, vacuole 57.43 58.0
Solyc02g070450.1.1 Tomato endoplasmic reticulum, extracellular, vacuole 56.93 57.64
KRH50394 Soybean extracellular, vacuole 57.92 53.79
CDY63842 Canola golgi, vacuole 38.12 53.47
TraesCS7A01G349200.1 Wheat endoplasmic reticulum, extracellular 49.26 49.14
EER88444 Sorghum extracellular, vacuole 49.51 49.02
TraesCS7B01G233500.1 Wheat extracellular 49.01 48.89
TraesCS7D01G329400.1 Wheat endoplasmic reticulum, extracellular 49.01 48.89
Zm00001d046134_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 48.76 48.4
HORVU7Hr1G079650.7 Barley extracellular, vacuole 48.76 44.87
CDY04498 Canola extracellular, vacuole 40.84 42.75
CDX83270 Canola extracellular, vacuole 40.84 42.31
CDY31181 Canola extracellular, vacuole 40.59 42.05
Os06t0531000-00 Rice vacuole 50.74 41.33
CDX93815 Canola extracellular 40.84 39.86
CDY69080 Canola extracellular 41.09 39.71
CDY21869 Canola plasma membrane 37.38 38.62
CDY20153 Canola plasma membrane 37.38 38.62
CDX83243 Canola vacuole 34.65 37.04
CDY13362 Canola extracellular, vacuole 37.87 36.96
CDY38531 Canola golgi, vacuole 34.65 36.65
CDX71449 Canola plasma membrane, vacuole 40.84 36.34
CDX67530 Canola extracellular 38.12 36.07
CDY56498 Canola extracellular, vacuole 37.38 34.16
CDY18049 Canola extracellular, vacuole 37.38 34.16
CDX92794 Canola endoplasmic reticulum, extracellular 37.13 33.26
CDY06601 Canola endoplasmic reticulum, extracellular 36.63 32.96
CDY20780 Canola extracellular, vacuole 36.63 32.96
CDY17308 Canola extracellular, vacuole 36.14 32.52
CDY46679 Canola extracellular, vacuole 35.89 32.51
CDY19908 Canola extracellular, vacuole 36.63 32.24
CDY12009 Canola extracellular, vacuole 36.63 32.17
CDY36734 Canola extracellular, vacuole 36.63 32.17
CDY30112 Canola cytosol 33.66 32.15
CDY22386 Canola extracellular, vacuole 32.67 30.56
CDX71547 Canola extracellular, vacuole 32.67 30.28
CDX87130 Canola vacuole 34.16 29.68
CDY19838 Canola extracellular, vacuole 34.16 29.55
CDY40219 Canola extracellular 31.93 28.67
CDY41232 Canola extracellular 31.93 28.6
CDX69064 Canola extracellular, plasma membrane, vacuole 35.64 28.51
CDY59775 Canola extracellular, vacuole 33.17 28.27
CDX75437 Canola extracellular, plasma membrane, vacuole 35.4 28.26
CDY64970 Canola extracellular, plasma membrane, vacuole 35.15 28.23
CDY32869 Canola endoplasmic reticulum, extracellular, plasma membrane 35.15 28.23
CDY20461 Canola extracellular 31.44 28.22
CDX76097 Canola extracellular 31.44 28.16
CDY26761 Canola vacuole 35.64 28.12
CDY37244 Canola vacuole 35.64 28.12
CDY62387 Canola extracellular 31.19 28.06
CDY53692 Canola extracellular 31.19 28.06
CDY08004 Canola vacuole 31.93 28.04
CDY02936 Canola extracellular 31.19 27.88
CDY14214 Canola endoplasmic reticulum, extracellular, vacuole 35.4 27.88
CDY50110 Canola extracellular, vacuole 32.67 27.73
CDY18092 Canola extracellular, vacuole 32.67 27.73
CDY12732 Canola extracellular, vacuole 32.92 27.71
CDY01191 Canola extracellular, vacuole 32.92 27.71
CDY63754 Canola extracellular, vacuole 32.67 27.62
CDY53600 Canola extracellular 30.69 27.56
CDY53213 Canola extracellular, vacuole 32.67 27.5
CDY41234 Canola extracellular 30.94 27.47
CDY24629 Canola vacuole 31.19 27.39
CDY08310 Canola extracellular, vacuole 32.43 27.35
CDY06469 Canola extracellular 32.43 27.35
CDY28063 Canola vacuole 30.94 27.17
CDY40218 Canola extracellular 30.45 27.15
CDY12371 Canola extracellular, vacuole 31.93 26.93
CDY27122 Canola extracellular, vacuole 31.68 26.72
CDY48807 Canola extracellular 32.67 26.56
CDY09427 Canola extracellular 32.67 26.56
CDY45466 Canola vacuole 30.2 26.52
CDY62033 Canola extracellular, plasma membrane, vacuole 34.9 26.45
CDY16440 Canola extracellular 32.18 25.79
CDX97707 Canola plastid 34.9 25.68
CDY58676 Canola extracellular, vacuole 31.93 25.6
CDY06818 Canola extracellular, plasma membrane, vacuole 31.19 25.1
CDY67322 Canola extracellular 13.37 24.43
CDY68826 Canola cytosol, endoplasmic reticulum, peroxisome 23.76 22.64
CDY59252 Canola extracellular, plasma membrane, vacuole 22.52 22.3
CDY31214 Canola vacuole 28.71 22.22
CDX74052 Canola vacuole 31.19 22.22
CDY21013 Canola extracellular 28.47 22.16
CDY23618 Canola endoplasmic reticulum, plasma membrane, vacuole 23.02 22.09
Protein Annotations
KEGG:00500+3.2.1.39Gene3D:3.20.20.80MapMan:50.3.2GO:A0A078H688UniProt:A0A078H688EnsemblPlants:CDY34065
ProteinID:CDY34065ProteinID:CDY34065.1GO:GO:0003674GO:GO:0003824GO:GO:0004553GO:GO:0005575
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00055963001InterPro:Glyco_hydro_17InterPro:Glycoside_hydrolase_SFPFAM:PF00332PANTHER:PTHR32227PANTHER:PTHR32227:SF229
SUPFAM:SSF51445SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0004EEE63BSEG:seg:
Description
BnaC03g62670DBnaC03g62670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H688]
Coordinates
chrLK032327:+:303569..305544
Molecular Weight (calculated)
44848.0 Da
IEP (calculated)
9.306
GRAVY (calculated)
-0.027
Length
404 amino acids
Sequence
(BLAST)
001: MTSRTLTRLP NLINVFLLIS LVFSGNVLQS VASLGINYGQ VGDNLPSPDK VINLLRSLRI NKTRIYDTNP QILSSFANSN IEIIVTIENQ VLTLLQDPQQ
101: ALQWVNSHIK PYIPATSITG IMVGNELFTD EDSSLIRYMM PATINIHKAL FQLGLDRYIQ VSSPSSLAVL AESYPPSAGS FKPEVTSVMQ QFLRFLEATR
201: SPFWINAYPY FPYKDNPNTI PIDYVLFNRN IGMTDPNTGL HYDNMMYAQV DAVAFAAAKL GYRNIEVRVA ETGWPSKGDV GEIGASPLNA ATYIRNLMMR
301: QFAGEGTPAR RSSRLEVYIF ALFNEDMKPG PISEKNYGIF QPDGSLAYDL GFSTMSTTST TTATSKSVTY SSSATKAKST LKYWKILILA MIGVSFRGKV
401: IEKI
Best Arabidopsis Sequence Match ( AT1G30080.1 )
(BLAST)
001: MSNMFSRIAM TNSIVLLLFS LTFLEHGLLF QRVSSLGINY GQVGDNLPPP DKVLQLLSSL HINKTRIYDT NPRVLTSFAN SNIELFVTVE NEMLPSLVDP
101: QQALQWVTTR IKPYFPATKI GGIAVGNELY TDDDSSLIGY LMPAMMSIHG ALVQTGLDKY IQVSTPNSLS VLQESYPPSA GCFRPEVAGV MTQLLGFLRN
201: TNSPFWINAY PYFAYKDSPT KIPLDYVLFN PNPGMVDPYT KYRYDNMLYA QVDAVIFAMA RLGFKDIEVG VSETGWPSKG DGDEVGATVA NAAVYNKNIL
301: RRQLQNEGTP LRPNLSFDVY LFALFNEDLK PGPTSERNYG LYQPDETMTY NVGLLSSSSL TSTSTTSSTS IISLTSSAST ALKKGKQRLM YWTCVYLLAI
401: HMLIRRSY
Arabidopsis Description
Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I4R0]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.