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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX76528
CDX76554
CDX78840
CDX80307
CDX89368
CDX90405
CDX90440
CDX92752
CDX94382
CDX96432
CDX99476
CDY01017
CDY01456
CDY01498
CDY01532
CDY08530
CDY08877
CDY12785
CDY14318
CDY33008
CDY34065
CDY38260
CDY42756
CDY50002
CDY50003
CDY54381
CDY67227
CDY67257
CDY69797
CDY70860

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17870.1 CDX72943 AT1G72770.1 19407142
AT4G17870.1 CDX96432 AT1G72770.1 19407142
AT4G17870.1 CDX72943 AT1G72770.1 19624469
AT4G17870.1 CDX96432 AT1G72770.1 19624469
AT4G17870.1 CDX72943 AT1G72770.1 21847091
AT4G17870.1 CDX96432 AT1G72770.1 21847091
AT4G17870.1 CDY01017 AT3G11410.1 19407142
AT4G17870.1 CDY08530 AT3G11410.1 19407142
AT4G17870.1 CDY67227 AT3G11410.1 19407142
AT4G17870.1 CDY67257 AT3G11410.1 19407142
AT4G17870.1 CDX76554 AT4G17870.1 21847091
AT4G17870.1 CDX90440 AT4G17870.1 21847091
AT4G17870.1 CDY01498 AT4G17870.1 21847091
AT4G17870.1 CDY08877 AT4G17870.1 21847091
AT4G17870.1 CDY69797 AT4G17870.1 21847091
AT4G17870.1 CDY70860 AT4G17870.1 21847091
AT4G17870.1 CDX76528 AT4G18340.1 19407142
AT4G17870.1 CDX78840 AT4G18340.1 19407142
AT4G17870.1 CDX90405 AT4G18340.1 19407142
AT4G17870.1 CDX99476 AT4G18340.1 19407142
AT4G17870.1 CDY01532 AT4G18340.1 19407142
AT4G17870.1 CDY34065 AT4G18340.1 19407142
AT4G17870.1 CDX89368 AT4G26080.1 19407142
AT4G17870.1 CDX92752 AT4G26080.1 19407142
AT4G17870.1 CDX94382 AT4G26080.1 19407142
AT4G17870.1 CDY14318 AT4G26080.1 19407142
AT4G17870.1 CDY42756 AT4G26080.1 19407142
AT4G17870.1 CDY50002 AT4G26080.1 19407142
AT4G17870.1 CDY50003 AT4G26080.1 19407142
AT4G17870.1 CDX89368 AT4G26080.1 19874541
AT4G17870.1 CDX92752 AT4G26080.1 19874541
AT4G17870.1 CDX94382 AT4G26080.1 19874541
AT4G17870.1 CDY14318 AT4G26080.1 19874541
AT4G17870.1 CDY42756 AT4G26080.1 19874541
AT4G17870.1 CDY50002 AT4G26080.1 19874541
AT4G17870.1 CDY50003 AT4G26080.1 19874541
AT4G17870.1 CDY38260 AT5G57050.1 19407142
AT4G17870.1 CDY54381 AT5G57050.1 19407142
AT4G17870.1 CDX80307 AT5G59220.1 19407142
AT4G17870.1 CDY33008 AT5G59220.1 19407142
AT4G17870.1 CDY01456 AT5G66880.1 19874541
AT4G17870.1 CDY12785 AT5G66880.1 19874541
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra012635.1-P Field mustard cytosol 100.0 100.0
CDY01498 Canola cytosol 99.48 99.48
AT4G17870.1 Thale cress cytosol 91.62 91.62
CDY69797 Canola cytosol 91.62 91.62
CDY70860 Canola cytosol 88.48 90.86
CDX76554 Canola cytosol 73.3 90.32
CDY08877 Canola cytosol 72.25 89.03
CDY58505 Canola nucleus 76.96 70.0
CDX77691 Canola nucleus 76.96 68.37
CDY03194 Canola nucleus 64.4 64.4
CDY68316 Canola nucleus 64.4 64.4
PGSC0003DMT400005378 Potato nucleus 70.68 63.38
Solyc06g061180.1.1 Tomato nucleus 69.63 62.44
KRH45453 Soybean cytosol 65.97 59.43
GSMUA_Achr4P19170_001 Banana cytosol 59.69 58.76
KRH75621 Soybean cytosol 64.92 57.94
GSMUA_Achr8P14780_001 Banana cytosol 61.78 57.28
VIT_02s0012g01270.t01 Wine grape cytosol 76.96 55.68
CDX76731 Canola cytosol 53.93 54.79
Zm00001d047037_P001 Maize cytosol 58.12 54.15
CDY11503 Canola cytosol 52.88 53.72
TraesCS1A01G191700.1 Wheat cytosol 59.16 53.55
Zm00001d030045_P001 Maize cytosol 59.16 53.3
TraesCS1D01G195300.1 Wheat cytosol 59.16 53.05
TraesCS1B01G206600.1 Wheat cytosol, unclear 58.64 52.58
Os10t0573400-01 Rice plasma membrane 58.12 52.36
OQU92088 Sorghum cytosol 57.59 51.89
CDY68675 Canola cytosol 41.36 48.77
CDY58053 Canola cytosol 41.36 48.77
CDY18391 Canola plastid 49.74 46.57
CDY54415 Canola cytosol 49.74 46.57
CDX91449 Canola plastid 49.21 45.41
CDY54453 Canola plastid 49.21 45.19
CDX78879 Canola cytosol 39.27 45.18
CDY58019 Canola cytosol 39.27 45.18
CDY14471 Canola plastid 48.69 44.93
CDY07739 Canola plastid 48.69 44.93
CDY22516 Canola plastid 48.17 44.88
CDX82120 Canola plastid 48.17 44.88
CDY48030 Canola plastid 48.17 44.88
CDX99450 Canola cytosol 38.74 44.58
CDY04951 Canola cytosol 45.55 44.16
CDY49462 Canola cytosol 41.36 42.93
CDY61488 Canola cytosol 41.36 42.93
CDY25052 Canola cytosol 41.88 42.78
CDY64350 Canola cytosol 40.84 42.62
CDX90028 Canola cytosol 41.88 42.55
CDY38728 Canola cytosol 40.84 42.39
CDY53905 Canola cytosol 41.36 42.25
CDY15183 Canola cytosol 41.36 42.25
CDX98844 Canola cytosol 45.03 42.16
CDY04688 Canola cytosol 40.84 41.94
CDY72318 Canola cytosol 44.5 41.87
CDX70150 Canola cytosol 44.5 41.67
CDX74368 Canola cytosol 41.88 41.45
CDY70517 Canola cytosol 39.79 41.08
CDX91871 Canola cytosol 41.36 40.93
CDX80959 Canola cytosol 43.46 40.89
HORVU1Hr1G050110.1 Barley plastid 58.64 40.88
CDX89219 Canola cytosol 39.27 40.54
CDX96197 Canola cytosol 39.79 40.43
CDX93191 Canola cytosol 42.93 40.39
CDY52923 Canola cytosol 42.93 40.0
CDY27022 Canola cytosol 39.27 39.89
CDX74796 Canola cytosol, nucleus, plastid 42.41 38.21
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 41.36 37.26
CDY07608 Canola cytosol, mitochondrion 40.31 36.32
CDY24911 Canola cytosol, mitochondrion 40.31 36.15
CDY07165 Canola cytosol 10.99 35.0
VIT_04s0008g00270.t01 Wine grape cytosol 37.17 24.48
VIT_08s0058g00230.t01 Wine grape plastid 36.65 21.74
VIT_13s0175g00110.t01 Wine grape plastid 6.81 12.26
Protein Annotations
EnsemblPlants:CDX90440EnsemblPlantsGene:GSBRNA2T00151050001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF6PFAM:PF10604ProteinID:CDX90440ProteinID:CDX90440.1SUPFAM:SSF55961
UniParc:UPI0002540A08MapMan:11.1.2.1.1.1::::
Description
BnaA03g43410D
Coordinates
chrLK031863:-:232326..233254
Molecular Weight (calculated)
21369.3 Da
IEP (calculated)
6.396
GRAVY (calculated)
-0.399
Length
191 amino acids
Sequence
(BLAST)
001: MPSQLTPEER SELAQSIAEF HTYHLGPGSC SSLHAQRIHA PPEIVWSVVR RFDKPQTYKH FIKSCSVEDG FEMRVGCTRA VNVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KERRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVTEAMAR SAGDGSGAQV T
Best Arabidopsis Sequence Match ( AT4G17870.1 )
(BLAST)
001: MPSELTPEER SELKNSIAEF HTYQLDPGSC SSLHAQRIHA PPELVWSIVR RFDKPQTYKH FIKSCSVEQN FEMRVGCTRD VIVISGLPAN TSTERLDILD
101: DERRVTGFSI IGGEHRLTNY KSVTTVHRFE KENRIWTVVL ESYVVDMPEG NSEDDTRMFA DTVVKLNLQK LATVAEAMAR NSGDGSGSQV T
Arabidopsis Description
PYR1Abscisic acid receptor PYR1 [Source:UniProtKB/Swiss-Prot;Acc:O49686]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.