Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX96432
CDY01017
CDY08530
CDY67227
CDY67257

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G45860.1 CDX72943 AT1G72770.1 19407142
AT5G45860.1 CDX96432 AT1G72770.1 19407142
AT5G45870.1 CDX72943 AT1G72770.1 19407142
AT5G45870.1 CDX96432 AT1G72770.1 19407142
AT5G45870.1 CDY01017 AT3G11410.1 19407142
AT5G45870.1 CDY08530 AT3G11410.1 19407142
AT5G45870.1 CDY67227 AT3G11410.1 19407142
AT5G45870.1 CDY67257 AT3G11410.1 19407142
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY58053 Canola cytosol 99.38 99.38
Bra025048.1-P Field mustard cytosol 96.91 92.35
AT5G45860.1 Thale cress cytosol 83.33 83.85
AT5G45870.1 Thale cress cytosol 79.01 80.5
CDX99450 Canola cytosol 62.35 60.84
CDX78879 Canola cytosol 62.35 60.84
CDY58019 Canola cytosol 62.35 60.84
KRH11022 Soybean cytosol 60.49 52.97
KRH21267 Soybean cytosol 59.26 51.89
GSMUA_Achr4P10630_001 Banana mitochondrion 50.62 50.93
CDX93191 Canola cytosol 55.56 44.34
CDY52923 Canola cytosol 55.56 43.9
CDX91449 Canola plastid 55.56 43.48
CDY54453 Canola plastid 55.56 43.27
CDY04951 Canola cytosol 52.47 43.15
CDY54415 Canola cytosol 54.32 43.14
CDY18391 Canola plastid 54.32 43.14
CDY07739 Canola plastid 54.32 42.51
CDY14471 Canola plastid 54.32 42.51
CDY70860 Canola cytosol 48.77 42.47
CDX74796 Canola cytosol, nucleus, plastid 54.94 41.98
CDY24911 Canola cytosol, mitochondrion 54.94 41.78
CDY07608 Canola cytosol, mitochondrion 54.32 41.51
CDX80959 Canola cytosol 51.85 41.38
CDY72318 Canola cytosol 51.85 41.38
CDY01498 Canola cytosol 48.77 41.36
CDY69797 Canola cytosol 48.77 41.36
CDX90440 Canola cytosol 48.77 41.36
CDX90028 Canola cytosol 46.91 40.43
CDX98844 Canola cytosol 50.62 40.2
CDX70150 Canola cytosol 50.62 40.2
CDY15183 Canola cytosol 46.3 40.11
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 52.47 40.09
CDX89219 Canola cytosol 45.68 40.0
CDY04688 Canola cytosol 45.68 39.78
CDY70517 Canola cytosol 45.06 39.46
PGSC0003DMT400026521 Potato cytosol 46.3 39.27
CDY49462 Canola cytosol 44.44 39.13
CDY25052 Canola cytosol 45.06 39.04
CDY11503 Canola cytosol 45.06 38.83
CDX76731 Canola cytosol 45.06 38.83
CDY61488 Canola cytosol 43.83 38.59
CDY53905 Canola cytosol 44.44 38.5
GSMUA_Achr4P15170_001 Banana cytosol 59.26 38.4
CDX96197 Canola cytosol 44.44 38.3
CDY58505 Canola nucleus 49.38 38.1
CDX74368 Canola cytosol 45.06 37.82
CDY27022 Canola cytosol 43.83 37.77
CDY64350 Canola cytosol 42.59 37.7
CDY38728 Canola cytosol 42.59 37.5
CDX76554 Canola cytosol 35.8 37.42
CDY08877 Canola cytosol 35.8 37.42
CDX91871 Canola cytosol 44.44 37.31
CDX77691 Canola nucleus 49.38 37.21
CDY68316 Canola nucleus 41.98 35.6
CDY03194 Canola nucleus 41.36 35.08
Solyc02g076770.1.1 Tomato cytosol 45.68 33.95
CDY48030 Canola plastid 40.12 31.71
CDY22516 Canola plastid 40.12 31.71
CDY07165 Canola cytosol 11.73 31.67
CDX82120 Canola plastid 39.51 31.22
Protein Annotations
EnsemblPlants:CDY68675EnsemblPlantsGene:GSBRNA2T00077047001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF8PFAM:PF10604ProteinID:CDY68675ProteinID:CDY68675.1SEG:seg
SUPFAM:SSF55961UniParc:UPI0004EC4DF5UniProt:A0A078JQE4MapMan:11.1.2.1.1.1::
Description
BnaCnng60010DBnaCnng60010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQE4]
Coordinates
chrLK037784:+:4080..4568
Molecular Weight (calculated)
17833.1 Da
IEP (calculated)
5.277
GRAVY (calculated)
-0.309
Length
162 amino acids
Sequence
(BLAST)
001: MKTSQQQHRC GSTLVQTINA PLPLVWSILR RFDYPQAYKQ FVKTCDLSSG DGGEGSVRDV TVVSGLPAGY SIERLDELDD ESHVMAISII GGDHRLLNYR
101: SKTTAFVAAE EEEKTVVVES YMVDVPKGNS VEETTSFADT IVGFNLKSLA KLSENMAPKR KS
Best Arabidopsis Sequence Match ( AT5G45860.1 )
(BLAST)
001: METSQKYHTC GSTLVQTIDA PLSLVWSILR RFDNPQAYKQ FVKTCNLSSG DGGEGSVREV TVVSGLPAEF SRERLDELDD ESHVMMISII GGDHRLVNYR
101: SKTMAFVAAD TEEKTVVVES YVVDVPEGNS EEETTSFADT IVGFNLKSLA KLSERVAHLK L
Arabidopsis Description
PYL11Abscisic acid receptor PYL11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ50]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.