Factsheet for PGSC0003DMT400026521

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006608
PGSC0003DMT400043146
PGSC0003DMT400069947

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45860.1	PGSC0003DMT400006608	AT1G72770.1	19407142
AT5G45870.1	PGSC0003DMT400006608	AT1G72770.1	19407142
AT5G45870.1	PGSC0003DMT400043146	AT3G11410.1	19407142
AT5G45870.1	PGSC0003DMT400069947	AT3G11410.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g076770.1.1	Tomato	cytosol	89.01	77.98
KRH21267	Soybean	cytosol	47.64	49.19
KRH11022	Soybean	cytosol	46.6	48.11
GSMUA_Achr4P10630_001	Banana	mitochondrion	40.31	47.83
AT4G18620.1	Thale cress	cytosol	40.31	46.95
CDY68675	Canola	cytosol	39.27	46.3
CDY58053	Canola	cytosol	39.27	46.3
AT5G45870.1	Thale cress	cytosol	38.22	45.91
AT5G45860.1	Thale cress	cytosol	38.22	45.34
CDX99450	Canola	cytosol	38.22	43.98
CDY58019	Canola	cytosol	38.22	43.98
CDX78879	Canola	cytosol	38.22	43.98
Bra025048.1-P	Field mustard	cytosol	38.74	43.53
Bra013334.1-P	Field mustard	cytosol	37.7	43.37
PGSC0003DMT400012888	Potato	cytosol	39.27	42.37
PGSC0003DMT400000606	Potato	cytosol	40.84	41.94
PGSC0003DMT400023511	Potato	cytosol	39.79	41.08
PGSC0003DMT400053102	Potato	cytosol, plastid	42.41	40.3
PGSC0003DMT400053119	Potato	cytosol, plastid	42.41	40.3
PGSC0003DMT400053120	Potato	cytosol, plastid	42.41	40.3
PGSC0003DMT400075340	Potato	cytosol	39.27	39.47
PGSC0003DMT400031686	Potato	cytosol	38.74	39.15
PGSC0003DMT400077008	Potato	cytosol	36.65	37.23
PGSC0003DMT400069734	Potato	mitochondrion, plastid	39.27	36.06
PGSC0003DMT400041080	Potato	mitochondrion	38.74	35.75
PGSC0003DMT400075056	Potato	plastid	39.79	35.51
PGSC0003DMT400061535	Potato	plastid	40.31	35.32
PGSC0003DMT400028658	Potato	nucleus	38.22	34.27
PGSC0003DMT400005378	Potato	nucleus	37.7	33.8
GSMUA_Achr4P15170_001	Banana	cytosol	43.46	33.2
PGSC0003DMT400045156	Potato	nucleus	39.79	32.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400026521	EnsemblPlantsGene:PGSC0003DMG400010238	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF8	PFAM:PF10604	PGSC:PGSC0003DMG400010238	SEG:seg	SUPFAM:SSF55961
UniParc:UPI00029538E2	UniProt:M1ANA7	MapMan:11.1.2.1.1.1	:	:	:

Description

Abscisic acid receptor PYL6 [Source:PGSC_GENE;Acc:PGSC0003DMG400010238]

Coordinates

chr2:-:32093246..32093821

Molecular Weight (calculated)

21588.6 Da

IEP (calculated)

4.778

GRAVY (calculated)

-0.232

Length

191 amino acids

Sequence
(BLAST)

001: MIKLHHTHEL SPKQCSSFLV QVIDAPLPLV WSLVRKFDKP QCYKNFISSC TLISGEGGVG SIREVNLVSG FPGKKSIERL DILDDDMHVS VFSILDADHS
101: FLNFKSTITL HEDKQEDHQE KEDIIGNNYY KTVAIQSYVV DIPEISCGDD TCEVTDNILR WNLRSLAWVA ENMDTTDQVS SLNLNKKEIA C

Best Arabidopsis Sequence Match ( AT2G40330.1 )
(BLAST)

001: MPTSIQFQRS STAAEAANAT VRNYPHHHQK QVQKVSLTRG MADVPEHVEL SHTHVVGPSQ CFSVVVQDVE APVSTVWSIL SRFEHPQAYK HFVKSCHVVI
101: GDGREVGSVR EVRVVSGLPA AFSLERLEIM DDDRHVISFS VVGGDHRLMN YKSVTTVHES EEDSDGKKRT RVVESYVVDV PAGNDKEETC SFADTIVRCN
201: LQSLAKLAEN TSKFS

Arabidopsis Description

PYL6Abscisic acid receptor PYL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8E3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.