Factsheet for Solyc02g076770.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096670.2.1
Solyc05g052980.2.1
Solyc08g062650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45860.1	Solyc08g062650.2.1	AT1G72770.1	19407142
AT5G45870.1	Solyc08g062650.2.1	AT1G72770.1	19407142
AT5G45870.1	Solyc03g096670.2.1	AT3G11410.1	19407142
AT5G45870.1	Solyc05g052980.2.1	AT3G11410.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026521	Potato	cytosol	77.98	89.01
GSMUA_Achr4P10630_001	Banana	mitochondrion	36.24	49.07
KRH21267	Soybean	cytosol	40.37	47.57
AT4G18620.1	Thale cress	cytosol	35.78	47.56
KRH11022	Soybean	cytosol	39.91	47.03
Solyc08g065410.1.1	Tomato	cytosol	31.19	46.58
AT5G45870.1	Thale cress	cytosol	33.49	45.91
CDY58053	Canola	cytosol	33.95	45.68
CDY68675	Canola	cytosol	33.95	45.68
AT5G45860.1	Thale cress	cytosol	33.49	45.34
CDY58019	Canola	cytosol	33.95	44.58
CDX99450	Canola	cytosol	33.95	44.58
CDX78879	Canola	cytosol	33.95	44.58
Bra013334.1-P	Field mustard	cytosol	33.49	43.98
Solyc12g055990.1.1	Tomato	cytosol	36.24	43.65
Solyc01g095700.2.1	Tomato	cytosol	37.16	43.55
Bra025048.1-P	Field mustard	cytosol	33.49	42.94
Solyc03g095780.1.1	Tomato	plastid	39.45	42.79
Solyc09g015380.1.1	Tomato	plastid	39.45	42.79
Solyc03g007310.2.1	Tomato	cytosol	36.24	42.7
Solyc10g076410.1.1	Tomato	plastid	39.45	42.36
Solyc12g095970.1.1	Tomato	cytosol	36.7	42.11
Solyc08g082180.2.1	Tomato	cytosol	35.78	41.27
Solyc10g085310.1.1	Tomato	plastid	37.16	38.03
Solyc05g052420.1.1	Tomato	cytosol	14.22	37.8
GSMUA_Achr4P15170_001	Banana	cytosol	41.28	36.0
Solyc06g061180.1.1	Tomato	nucleus	33.95	34.74
Solyc08g076960.1.1	Tomato	extracellular	36.7	34.63
Solyc06g050500.2.1	Tomato	plastid	39.91	31.64

Protein Annotations

EnsemblPlants:Solyc02g076770.1.1	EnsemblPlantsGene:Solyc02g076770.1	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase	InterPro:START-like_dom_sf
PANTHER:PTHR31213	PANTHER:PTHR31213:SF8	PFAM:PF10604	SUPFAM:SSF55961	UniParc:UPI0002767939	UniProt:K4B8Q4
MapMan:11.1.2.1.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:41870945..41871601

Molecular Weight (calculated)

24851.6 Da

IEP (calculated)

4.851

GRAVY (calculated)

-0.244

Length

218 amino acids

Sequence
(BLAST)

001: MDQIDIYSNP KCIRPIMLFT NQPKNSKALE EMIKLHHTHE LSPKQCSSFL VKVIDAPLPL VWSLVRKFDK PQCYKNFISS CTLISGEGGV GSIREVNLVS
101: GFPGKRSIER LDILDDDMHV SVFSVVDGDH SFSNFKSIMT LHEDKVEEDH DIIGNYYKTV VIHSYVVDIP EISCRDDTCE VTDNILRWNL RSLAWVAENM
201: DTNDQVSSLD LNEKEITC

Best Arabidopsis Sequence Match ( AT1G01360.1 )
(BLAST)

001: MMDGVEGGTA MYGGLETVQY VRTHHQHLCR ENQCTSALVK HIKAPLHLVW SLVRRFDQPQ KYKPFVSRCT VIGDPEIGSL REVNVKSGLP ATTSTERLEL
101: LDDEEHILGI KIIGGDHRLK NYSSILTVHP EIIEGRAGTM VIESFVVDVP QGNTKDETCY FVEALIRCNL KSLADVSERL ASQDITQ

Arabidopsis Description

PYL9RCAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4H4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.