Factsheet for Solyc03g096670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g104030.2.1
Solyc02g076770.1.1
Solyc04g082760.2.1
Solyc06g061180.1.1
Solyc08g065410.1.1
Solyc09g015380.1.1
Solyc10g024360.1.1
Solyc10g076410.1.1
Solyc10g085310.1.1
Solyc12g095970.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11410.1	Solyc08g065410.1.1	AT2G26040.1	19407142
AT3G11410.1	Solyc12g095970.1.1	AT2G26040.1	19407142
AT3G11410.1	Solyc04g082760.2.1	AT2G33610.1	19033529
AT3G11410.1	Solyc09g015380.1.1	AT2G38310.1	19407142
AT3G11410.1	Solyc10g076410.1.1	AT2G38310.1	19407142
AT3G11410.1	Solyc10g085310.1.1	AT2G38310.1	19407142
AT3G11410.1	Solyc06g061180.1.1	AT4G17870.1	19407142
AT3G11410.1	Solyc01g104030.2.1	AT4G22200.1	11181729
AT3G11410.1	Solyc10g024360.1.1	AT4G22200.1	11181729
AT3G11410.1	Solyc01g104030.2.1	AT4G22200.1	12034902
AT3G11410.1	Solyc10g024360.1.1	AT4G22200.1	12034902
AT3G11410.1	Solyc02g076770.1.1	AT5G45870.1	19407142
AT3G11410.1	Solyc06g061180.1.1	AT5G46790.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043146	Potato	nucleus	95.57	94.63
Solyc05g052980.2.1	Tomato	nucleus	67.49	66.99
GSMUA_AchrUn_...	Banana	cytosol	43.6	62.54
CDY67227	Canola	cytosol	56.16	61.46
CDY67257	Canola	nucleus	55.91	61.19
Bra002038.1-P	Field mustard	nucleus	55.91	59.74
VIT_13s0019g02200.t01	Wine grape	plastid	58.37	59.25
AT3G11410.1	Thale cress	cytosol	58.13	59.15
CDY08530	Canola	nucleus	56.4	58.27
CDY01017	Canola	nucleus	55.91	57.76
Bra034845.1-P	Field mustard	nucleus	56.16	57.14
KXG35986	Sorghum	cytosol, peroxisome, plastid	28.57	57.14
Solyc06g076400.2.1	Tomato	nucleus	55.91	55.37
GSMUA_Achr5P29000_001	Banana	cytosol	51.48	54.71
KRH73525	Soybean	cytosol, mitochondrion, peroxisome, plastid	14.04	53.77
GSMUA_Achr11P...	Banana	cytosol	52.22	53.67
GSMUA_Achr6P15180_001	Banana	cytosol	48.52	53.24
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	44.58	51.71
TraesCS3A01G362200.1	Wheat	nucleus, plastid	49.26	51.15
TraesCS5B01G182000.1	Wheat	peroxisome	43.84	51.0
HORVU3Hr1G085930.3	Barley	nucleus, plastid	49.26	50.89
TraesCS5D01G188600.1	Wheat	peroxisome	43.6	50.72
TraesCS5A01G183600.1	Wheat	peroxisome	43.6	50.72
TraesCS3D01G355900.1	Wheat	plastid	49.51	50.63
EER96576	Sorghum	cytosol	44.34	50.42
Os09t0325700-01	Rice	cytosol	44.34	50.28
HORVU4Hr1G060370.1	Barley	nucleus	49.51	50.25
Os03t0268600-01	Rice	nucleus	49.51	49.75
TraesCS4D01G210900.1	Wheat	nucleus	50.0	49.51
TraesCS4B01G210100.1	Wheat	nucleus	49.51	49.51
Zm00001d042886_P001	Maize	nucleus	49.51	49.26
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	43.35	49.16
TraesCS4A01G094300.1	Wheat	nucleus	49.01	48.66
EES01744	Sorghum	plastid	49.26	48.54
Zm00001d028574_P001	Maize	nucleus	47.29	48.48
Os01t0846300-01	Rice	cytosol, mitochondrion, nucleus, plastid	49.26	48.31
EER92493	Sorghum	nucleus	47.29	47.88
Zm00001d012401_P001	Maize	cytosol, mitochondrion, nucleus, plastid	48.28	47.46
TraesCS3B01G394600.3	Wheat	plastid	49.51	46.96
KXG22152	Sorghum	nucleus	46.8	40.95
Solyc03g006930.1.1	Tomato	cytosol	33.25	40.79
Solyc03g006960.2.1	Tomato	nucleus	37.44	40.43
Solyc03g006940.1.1	Tomato	nucleus	33.99	40.0
Solyc03g006950.1.1	Tomato	cytosol, nucleus, peroxisome	33.99	39.77
Solyc08g062640.2.1	Tomato	cytosol	12.81	38.81
Solyc03g007230.2.1	Tomato	cytosol	37.19	38.04
Solyc08g082260.1.1	Tomato	nucleus	31.28	32.32
Solyc06g051940.2.1	Tomato	cytosol	33.74	31.0
Solyc06g082700.1.1	Tomato	cytosol, peroxisome, plastid	10.1	28.87
Solyc12g096020.1.1	Tomato	cytosol, nucleus, plastid	35.96	28.74
Solyc07g040990.2.1	Tomato	cytosol	35.22	26.68
Solyc08g062650.2.1	Tomato	extracellular	29.56	25.59
Solyc06g084100.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	16.5	25.19
Solyc09g065650.2.1	Tomato	mitochondrion	17.49	7.6

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.1	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872
InterPro:IPR001932	InterPro:IPR036457	UniProt:K4BJ85	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF518
SMART:SM00332	SUPFAM:SSF81606	EnsemblPlantsGene:Solyc03g096670.2	EnsemblPlants:Solyc03g096670.2.1	UniParc:UPI0002767DE3	SEG:seg

Description

No Description!

Coordinates

chr3:+:58989955..58991908

Molecular Weight (calculated)

44686.2 Da

IEP (calculated)

6.323

GRAVY (calculated)

-0.397

Length

406 amino acids

Sequence
(BLAST)

001: MSFGETRTIA PTEPSTEAAR RRRMEIHQFR FVASDMAVAP PSSMENGRKR KKLEKTVSVK SYDSKEKKQF KLERIVSLPL SLPCTDVGEK KLAENKETET
101: NALDLTESAS VSSNIERQGV SDCPKFGMTS VCGRRRDMED TVSIYPSFLQ DKHEKSSILH FFGLYDGHGC SHAAMKCKDR MHEIVKNEVE SAGEATWKEM
201: MIQSFSKMDK EVVEYSKGAG GTQTADCRCE LQTPQCDAVG STAVVAVLTP NKIVVSNCGD SRAVLCRNGV PIPLSTDHKP DRPDELNRIE EAGGRVIYWD
301: GARVLGVLAM SRAIGDSYLK PYVTSEPEVT ITERTVEDEC LILASDGLWD VVSNETACGV ARMCLRSGQN SDQACTDASI LLTRLALARH SSDNVSVVVV
401: DLKRGL

Best Arabidopsis Sequence Match ( AT3G11410.1 )
(BLAST)

001: MAGICCGVVG ETEPAAPVDS TSRASLRRRL DLLPSIKIVA DSAVAPPLEN CRKRQKRETV VLSTLPGNLD LDSNVRSENK KARSAVTNSN SVTEAESFFS
101: DVPKIGTTSV CGRRRDMEDA VSIHPSFLQR NSENHHFYGV FDGHGCSHVA EKCRERLHDI VKKEVEVMAS DEWTETMVKS FQKMDKEVSQ RECNLVVNGA
201: TRSMKNSCRC ELQSPQCDAV GSTAVVSVVT PEKIIVSNCG DSRAVLCRNG VAIPLSVDHK PDRPDELIRI QQAGGRVIYW DGARVLGVLA MSRAIGDNYL
301: KPYVIPDPEV TVTDRTDEDE CLILASDGLW DVVPNETACG VARMCLRGAG AGDDSDAAHN ACSDAALLLT KLALARQSSD NVSVVVVDLR KRRNNQASS

Arabidopsis Description

PP2CAProtein phosphatase 2C 37 [Source:UniProtKB/Swiss-Prot;Acc:P49598]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.