Factsheet for Zm00001d012401_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
plastid 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010209_P001
Zm00001d010210_P001
Zm00001d011473_P003
Zm00001d012475_P001
Zm00001d016294_P001
Zm00001d018799_P001
Zm00001d028793_P001
Zm00001d030045_P001
Zm00001d038252_P001
Zm00001d038436_P001
Zm00001d038949_P001
Zm00001d042829_P001
Zm00001d043014_P001
Zm00001d044056_P003
Zm00001d047037_P001
Zm00001d047705_P001
Zm00001d053687_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07430.1	Zm00001d018799_P001	AT1G30270.1	17898163
AT1G07430.1	Zm00001d011473_P003	AT2G26650.1	17898163
AT1G07430.1	Zm00001d044056_P003	AT2G26650.1	17898163
AT1G07430.1	Zm00001d038949_P001	AT3G06610.1	21798944
AT1G07430.1	Zm00001d042829_P001	AT3G06610.1	21798944
AT3G11410.1	Zm00001d016294_P001	AT1G73000.1	19407142
AT3G11410.1	Zm00001d016294_P001	AT2G26040.1	19407142
AT3G11410.1	Zm00001d053687_P001	AT2G33610.1	19033529
AT3G11410.1	Zm00001d012475_P001	AT2G38310.1	19407142
AT3G11410.1	Zm00001d028793_P001	AT2G38310.1	19407142
AT3G11410.1	Zm00001d038436_P001	AT2G38310.1	19407142
AT3G11410.1	Zm00001d043014_P001	AT2G38310.1	19407142
AT3G11410.1	Zm00001d047705_P001	AT2G38310.1	19407142
AT3G11410.1	Zm00001d030045_P001	AT4G17870.1	19407142
AT3G11410.1	Zm00001d047037_P001	AT4G17870.1	19407142
AT3G11410.1	Zm00001d010209_P001	AT4G22200.1	11181729
AT3G11410.1	Zm00001d010210_P001	AT4G22200.1	11181729
AT3G11410.1	Zm00001d038252_P001	AT4G22200.1	11181729
AT3G11410.1	Zm00001d010209_P001	AT4G22200.1	12034902
AT3G11410.1	Zm00001d010210_P001	AT4G22200.1	12034902
AT3G11410.1	Zm00001d038252_P001	AT4G22200.1	12034902
AT3G11410.1	Zm00001d030045_P001	AT5G46790.1	19407142
AT3G11410.1	Zm00001d047037_P001	AT5G46790.1	19407142
AT5G59220.1	Zm00001d012475_P001	AT2G38310.1	19407142
AT5G59220.1	Zm00001d028793_P001	AT2G38310.1	19407142
AT5G59220.1	Zm00001d038436_P001	AT2G38310.1	19407142
AT5G59220.1	Zm00001d043014_P001	AT2G38310.1	19407142
AT5G59220.1	Zm00001d047705_P001	AT2G38310.1	19407142
AT5G59220.1	Zm00001d030045_P001	AT4G17870.1	19407142
AT5G59220.1	Zm00001d047037_P001	AT4G17870.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01744	Sorghum	plastid	91.77	91.99
Zm00001d042886_P001	Maize	nucleus	90.31	91.42
TraesCS3A01G362200.1	Wheat	nucleus, plastid	72.88	76.98
HORVU3Hr1G085930.3	Barley	nucleus, plastid	71.91	75.57
TraesCS3D01G355900.1	Wheat	plastid	71.67	74.56
Os01t0846300-01	Rice	cytosol, mitochondrion, nucleus, plastid	72.88	72.71
TraesCS3B01G394600.3	Wheat	plastid	72.64	70.09
GSMUA_AchrUn_...	Banana	cytosol	45.04	65.72
GSMUA_Achr6P15180_001	Banana	cytosol	55.93	62.43
CDY18067	Canola	cytosol	8.47	59.32
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	49.64	58.57
Zm00001d028574_P001	Maize	nucleus	53.51	55.81
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	48.18	55.59
AT2G29380.1	Thale cress	nucleus	46.49	53.04
CDY67257	Canola	nucleus	47.46	52.83
CDY67227	Canola	cytosol	46.97	52.29
KRH15068	Soybean	cytosol	50.36	52.0
Bra002038.1-P	Field mustard	nucleus	47.7	51.84
CDY40181	Canola	cytosol	45.76	51.64
CDY45436	Canola	cytosol	45.76	51.64
Bra018398.1-P	Field mustard	cytosol	45.76	51.64
KRH73067	Soybean	cytosol	50.36	51.11
KRG97855	Soybean	cytosol	49.39	51.0
VIT_06s0004g05460.t01	Wine grape	nucleus	48.43	50.89
Solyc05g052980.2.1	Tomato	nucleus	50.12	50.61
KRH31027	Soybean	cytosol	48.91	50.37
VIT_13s0019g02200.t01	Wine grape	plastid	48.18	49.75
CDY08530	Canola	nucleus	47.22	49.62
CDY01017	Canola	nucleus	47.22	49.62
CDY06705	Canola	nucleus	46.49	49.23
Bra034845.1-P	Field mustard	nucleus	47.22	48.87
PGSC0003DMT400069947	Potato	cytosol	49.39	48.8
AT3G11410.1	Thale cress	cytosol	46.97	48.62
Solyc03g096670.2.1	Tomato	nucleus	47.46	48.28
PGSC0003DMT400043146	Potato	nucleus	47.22	47.56
Bra002594.1-P	Field mustard	plastid	47.22	47.33
CDX80307	Canola	nucleus, plastid	44.79	46.72
CDY33008	Canola	nucleus, plastid	44.55	46.58
PGSC0003DMT400077989	Potato	cytosol	46.0	46.34
AT5G59220.1	Thale cress	nucleus	46.25	46.25
KRH73525	Soybean	cytosol, mitochondrion, peroxisome, plastid	11.86	46.23
Solyc06g076400.2.1	Tomato	nucleus	45.28	45.61
CDY10275	Canola	nucleus	47.46	45.58
Bra015579.1-P	Field mustard	nucleus	46.97	45.54
AT1G07430.1	Thale cress	nucleus	47.22	44.12
Zm00001d009626_P001	Maize	nucleus	39.71	43.73
CDY06259	Canola	nucleus	46.0	43.58
Bra031574.1-P	Field mustard	nucleus	46.0	43.58
Zm00001d011495_P001	Maize	cytosol	41.16	43.15
Bra030455.1-P	Field mustard	cytosol	15.98	41.51
Zm00001d044015_P001	Maize	cytosol	41.16	41.46
Zm00001d025055_P001	Maize	cytosol	43.58	38.79
Zm00001d011132_P001	Maize	cytosol, nucleus	13.56	37.58
Zm00001d038846_P001	Maize	cytosol, nucleus	33.66	37.57
CDY36606	Canola	nucleus	21.07	34.8
Zm00001d009747_P001	Maize	cytosol	35.35	34.52
Zm00001d039163_P002	Maize	cytosol	35.35	34.03
Zm00001d011202_P002	Maize	cytosol, peroxisome, plastid	35.35	33.33
Zm00001d011131_P001	Maize	cytosol	22.52	32.98
Zm00001d004357_P001	Maize	nucleus	40.92	31.07
Zm00001d044301_P001	Maize	cytosol, nucleus	35.84	30.58
PGSC0003DMT400049695	Potato	extracellular	3.87	14.55
Zm00001d007529_P001	Maize	nucleus	17.68	14.31
Zm00001d007528_P001	Maize	extracellular, vacuole	6.05	9.84
Zm00001d007554_P001	Maize	cytosol	0.24	0.41
Zm00001d007558_P001	Maize	cytosol	0.0	0.0
Zm00001d007533_P001	Maize	extracellular	0.0	0.0
Zm00001d007532_P001	Maize	cytosol	0.0	0.0
Zm00001d007530_P001	Maize	cytosol	0.0	0.0

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.1	Gene3D:3.60.40.10	ProteinID:AQK99475.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0005575	GO:GO:0006464
GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457
UniProt:K7VB80	EMBL:KJ728352	EMBL:KJ855133	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF532
SMART:SM00332	SUPFAM:SSF81606	TMHMM:TMhelix	UniParc:UPI000220FA88	EnsemblPlantsGene:Zm00001d012401	EnsemblPlants:Zm00001d012401_P001
EnsemblPlants:Zm00001d012401_T001	SEG:seg	:	:	:	:

Description

protein phosphatase homolog4 protein phosphatase homolog4

Coordinates

chr8:-:173733501..173735518

Molecular Weight (calculated)

43822.7 Da

IEP (calculated)

6.764

GRAVY (calculated)

-0.218

Length

413 amino acids

Sequence
(BLAST)

001: MAEICCEEAK STPATAVAAA SVSATAAAAA AVAVASSALE RRRRRLEMRR FRVAGDPEAP VAEDVRAAKR QRLARTLSST CPDAGSGSGS DSDRPALPER
101: LPRYGVTSVC GRRREMEDTV SVRPDFVPGT SKQHFFGVFD GHGCSHVATM CQNMMHEVVA DEHRKADCSG EETAWKAVME RSFARLDEQA ASWATSRSRD
201: EPSCRCEQQK PLRCDHVGST AVVAVVSPTH VVVANAGDSR AVLSRAGVPV PLSVDHKPDR PDELARIKAA GGRVIYWDGA RVLGVLAMSR AIGDGYLKPF
301: VSSEPEVTVT ERTDDDECLI LASDGLWDVV TNEMACEVVR ACFHSNGPPA PAARANGAAL RAAENGSAAA KGVSVEDSDK ACSDAAMLLA KLALARRSAD
401: NVSVVVVDLR RGI

Best Arabidopsis Sequence Match ( AT1G07430.1 )
(BLAST)

001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA

Arabidopsis Description

AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.