Factsheet for Zm00001d053687_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000110_P003
Zm00001d005609_P001
Zm00001d009747_P001
Zm00001d011131_P001
Zm00001d011132_P001
Zm00001d011202_P002
Zm00001d012401_P001
Zm00001d020100_P001
Zm00001d028574_P001
Zm00001d038846_P001
Zm00001d039163_P002
Zm00001d041847_P002
Zm00001d042886_P001
Zm00001d044301_P001
Zm00001d053687_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33610.1	Zm00001d000110_P003	AT1G21700.1	12140326
AT2G33610.1	Zm00001d041847_P002	AT1G21700.1	12140326
AT2G33610.1	Zm00001d000110_P003	AT1G21700.1	16845477
AT2G33610.1	Zm00001d041847_P002	AT1G21700.1	16845477
AT2G33610.1	Zm00001d009747_P001	AT1G72770.1	19033529
AT2G33610.1	Zm00001d011131_P001	AT1G72770.1	19033529
AT2G33610.1	Zm00001d011132_P001	AT1G72770.1	19033529
AT2G33610.1	Zm00001d011202_P002	AT1G72770.1	19033529
AT2G33610.1	Zm00001d038846_P001	AT1G72770.1	19033529
AT2G33610.1	Zm00001d039163_P002	AT1G72770.1	19033529
AT2G33610.1	Zm00001d044301_P001	AT1G72770.1	19033529
AT2G33610.1	Zm00001d053687_P001	AT2G33610.1	12140326
AT2G33610.1	Zm00001d053687_P001	AT2G33610.1	16845477
AT2G33610.1	Zm00001d005609_P001	AT3G11410.1	19033529
AT2G33610.1	Zm00001d012401_P001	AT3G11410.1	19033529
AT2G33610.1	Zm00001d020100_P001	AT3G11410.1	19033529
AT2G33610.1	Zm00001d028574_P001	AT3G11410.1	19033529
AT2G33610.1	Zm00001d042886_P001	AT3G11410.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04686	Sorghum	plastid	82.83	83.33
Os02t0194000-01	Rice	nucleus	53.69	66.58
HORVU6Hr1G034070.2	Barley	plastid	63.47	63.98
TraesCS6B01G195400.1	Wheat	plastid	62.87	63.89
TraesCS6D01G156700.3	Wheat	plastid	58.28	58.75
TraesCS6A01G167800.1	Wheat	plastid	58.48	58.6
GSMUA_AchrUn_...	Banana	plastid	45.11	45.75
KRH60872	Soybean	nucleus	38.12	39.46
KRH51554	Soybean	nucleus	38.52	39.31
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	38.52	39.23
AT2G33610.1	Thale cress	nucleus	36.53	39.02
CDY23721	Canola	plastid	35.73	39.0
Bra021864.1-P	Field mustard	plastid	35.53	38.78
CDY37705	Canola	plastid	35.53	38.78
PGSC0003DMT400025895	Potato	nucleus	37.52	37.68
Solyc04g082760.2.1	Tomato	nucleus	36.53	37.42
Zm00001d041847_P002	Maize	nucleus	23.75	15.39
Zm00001d000110_P003	Maize	mitochondrion	22.75	14.54
Zm00001d003284_P001	Maize	nucleus	24.95	14.17
Zm00001d004521_P001	Maize	nucleus, plastid	20.76	12.4
Zm00001d013391_P006	Maize	nucleus	21.56	11.83
Zm00001d033825_P001	Maize	nucleus	20.76	11.52

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100273414	MapMan:12.4.2.1	UniProt:A0A1D6QRJ9	ProteinID:AQK60131.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934
PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF44	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717
InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI0008444124	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d053687
EnsemblPlants:Zm00001d053687_P001	EnsemblPlants:Zm00001d053687_T001	SEG:seg	:	:	:

Description

MYB-related-transcription factor 88 MYB-related-transcription factor 88

Coordinates

chr4:-:239036651..239041066

Molecular Weight (calculated)

55211.4 Da

IEP (calculated)

6.730

GRAVY (calculated)

-0.402

Length

501 amino acids

Sequence
(BLAST)

001: MATTATTMAP VTAPVATANL EPTPTPLHPR PAAPPHLRAL STLAPVKSEA PPTPSSSTAI TAAAGAEDPS YIITVPSYSA WFSFDSIHDT ERRLLPEFFV
101: GEAAAASGCR GPHAYKYYRD SLIRRFRARP GRRLTLTEAR RGLVGDVGSV RRVFDFLEEW GLINYGALPS GSKQAKEKRE EAAQQSSLPF GAIAPRKLCT
201: GCRTVCGLAY YACDKVCILD LADISLCARC YVNNNYRPGL SPANFKRVEI TEDAKPDWTD KETLHLLEAV LHYGEDWKKV SEHVSSRSEK DCIARFIRLP
301: FGEQFMGHKE DRMRFENTDD NTDEPGANVS KRLRLTPLAD ASNPIMAQVA FLSAIVGSDV ASAAAQAAIS AQSRVDLNDG EIETSINSIK QEESSHTNGL
401: SANVLLKEAA ANARAQLEKE RNSIEQSLSN IVDVQMKEIQ DKICRFEQKE MLMEKERQQL HFLRDLLFTD QLAVMQHQQR SPAVATECKG DEKPKPVASM
501: S

Best Arabidopsis Sequence Match ( AT2G33610.1 )
(BLAST)

001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

Arabidopsis Description

SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.