Factsheet for Zm00001d013391_P006

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93546	Sorghum	nucleus	89.92	90.32
Zm00001d033825_P001	Maize	nucleus	87.08	88.04
TraesCS4D01G053300.2	Wheat	nucleus	69.44	68.84
TraesCS4A01G261600.1	Wheat	nucleus	69.44	68.39
TraesCS4B01G053000.2	Wheat	nucleus	69.66	66.95
HORVU4Hr1G008820.1	Barley	nucleus	69.44	66.53
GSMUA_Achr3P30500_001	Banana	nucleus	34.83	33.54
GSMUA_Achr7P26780_001	Banana	nucleus	33.63	33.52
Zm00001d004521_P001	Maize	nucleus, plastid	27.93	30.39
CDX76281	Canola	nucleus	31.33	29.67
CDY46250	Canola	nucleus	30.56	29.46
CDX75433	Canola	nucleus	29.79	29.09
PGSC0003DMT400001865	Potato	nucleus	29.9	28.89
Bra011533.1-P	Field mustard	nucleus	29.46	28.86
AT4G34430.4	Thale cress	nucleus	31.0	28.7
Solyc01g109510.2.1	Tomato	nucleus	29.46	28.47
KRH24488	Soybean	nucleus	29.9	26.87
KRH29482	Soybean	nucleus	30.01	26.17
VIT_03s0063g02410.t01	Wine grape	nucleus	28.81	25.71
Os03t0722100-01	Rice	cytosol, nucleus	14.02	23.93
Zm00001d053687_P001	Maize	plastid	11.83	21.56
Zm00001d000110_P003	Maize	mitochondrion	16.21	18.88
Zm00001d041847_P002	Maize	nucleus	15.66	18.5
Zm00001d003284_P001	Maize	nucleus	12.71	13.15

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	UniProt:A0A1D6GIR6	ProteinID:AQK63329.1
ProteinID:AQK63335.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872
InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249
PFAM:PF00569	PFAM:PF04433	PFAM:PF16495	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934
PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF62	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291
SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI00084445EF
InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d013391	EnsemblPlants:Zm00001d013391_P006	EnsemblPlants:Zm00001d013391_T006	InterPro:Znf_ZZ	SEG:seg

Description

SWI/SNF complex subunit SWI3D

Coordinates

chr5:-:10268280..10276931

Molecular Weight (calculated)

99478.6 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.659

Length

913 amino acids

Sequence
(BLAST)

001: MEPKPSSAAH ADAPAVEAPR RRGGGGKRKS AGSSFTPSKR QAKERNASFH VPPHLLHSGP LTRAARQSPH KLSGTPSESV PASSAAATGD GVSGGQAVVD
101: AIRPETEETP APELPLVDEM FEAVRSRGAG VHVVPTFAGW FSWKEIHPVE KQTLPSFFNG KSEKRTPEVY LAVRNSIMMK FHANPQLQLE SKDLAELSIG
201: ETDARQEILE FLDHWGLINF HPFPPDGHEE SKPEETQDNS NDEKASLIEQ LFKFESVQSY MTPLPMKEDV RAPPPLPSLI PESVLIQDVV AAAEPSVEYH
301: CNSCSVDCSR KRYHCRTQAD FDLCCDCYNE GKFDPGMAKT DFILMDSAGV SGASGTSWTD EETLLLLEGL EIFGGKWAEI AEHVATKTKA QCMLHFLQMQ
401: IEDRFHDGKD INQNIPVSTD QATTEKAIAE TSEKMEVEDK VEGRGTVDEK ASEKTEGNCE ETKTENASVV VNKDTQNSDG RDSGASPSTE EPKQSSDEQP
501: VVKENSADVD TSGEKLSNVA IDILKSAFEA TGHSPEYEGS FADAGNPVMA LAAYLAGLVE DDNTTTSFRS SLKSVSDVSP ALQLSSRHCF ILEDPPDELK
601: DICASVSKKN RDGDQKQDED MIQNSIDTEK KEINEKEGKS LSVEKKNNSS MSQNDHQESG IKSVSSDDCS LVEPKTNNAK ESGDSTAIGD KSATETTKGN
701: TEQVNDLPSV EVEAPDDSSS KGKDELNKTK DAVATPATVQ EQKHSQTLGN GDREVDSLFL YIVYLAEPNN IESVVVGEEK GSVVTANRPD SIARLKRAAA
801: TAVSAAAVKA RFLGDQEEYQ IRRLTALVIE KLFQKIEVKM SLFSEIEQVV FRTREYTEKT RKKLLKERNA IIAARMGALP SRPNQTGVAG NRLPPGYGNP
901: PVRPPNAMPR PTS

Best Arabidopsis Sequence Match ( AT1G21700.1 )
(BLAST)

001: MPASEDRRGK WKRKKRGGLS AARKPKQEEE DMEEEDEENN NNNNEEMDDV ENADELQQNG GATPDPGLGI GEVVEDSGSR ISDFPAVVKR VVIRPHASVM
101: AVVAAERAGL IGETRGQGSL PALENISFGQ LQALSTVPAD SLDLERSDGS SSAYVISPPP IMDGEGVVKR FGDLVHVLPM HSDWFAPNTV DRLERQVVPQ
201: FFSGKSPNHT PESYMEFRNA IVSKYVENPE KTLTISDCQG LVDGVDIEDF ARVFRFLDHW GIINYCATAQ SHPGPLRDVS DVREDTNGEV NVPSAALTSI
301: DSLIKFDKPN CRHKGGEVYS SLPSLDGDSP DLDIRIREHL CDSHCNHCSR PLPTVYFQSQ KKGDILLCCD CFHHGRFVVG HSCLDFVRVD PMKFYGDQDG
401: DNWTDQETLL LLEAVELYNE NWVQIADHVG SKSKAQCILH FLRLPVEDGL LDNVEVSGVT NTENPTNGYD HKGTDSNGDL PGYSEQGSDT EIKLPFVKSP
501: NPVMALVAFL ASAVGPRVAA SCAHESLSVL SEDDRMKSEG MQGKEASLLD GENQQQDGAH KTSSQNGAEA QTPLPQDKVM AAFRAGLSAA ATKAKLFADH
601: EEREIQRLSA NIVNHQLKRM ELKLKQFAEI ETLLMKECEQ VEKTRQRFSA ERARMLSARF GSPGGISPQT NNLQGMSLST GGNNINSLMH QQHQQQQASA
701: TSQPSIIPGF SNNPQVQAQM HFMARQQQQQ QQQQQQQQQA FSFGPRLPLN AIQTNAGSTA SPNVMFGNNQ LNNPAAAGAA SINQPSFSHP MVRSSTGSGS
801: GSGLGLN

Arabidopsis Description

SWI3CSWI/SNF complex subunit SWI3C [Source:UniProtKB/Swiss-Prot;Acc:Q9XI07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.