Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93546 | Sorghum | nucleus | 25.05 | 14.74 |
| Zm00001d033825_P001 | Maize | nucleus | 24.67 | 14.62 |
| TraesCS4A01G261600.1 | Wheat | nucleus | 24.67 | 14.24 |
| TraesCS4D01G053300.2 | Wheat | nucleus | 24.49 | 14.22 |
| Zm00001d013391_P006 | Maize | nucleus | 23.93 | 14.02 |
| HORVU4Hr1G008820.1 | Barley | nucleus | 24.67 | 13.85 |
| TraesCS4B01G053000.2 | Wheat | nucleus | 24.49 | 13.79 |
| Os04t0110300-02 | Rice | plasma membrane | 22.06 | 13.32 |
| GSMUA_Achr3P30500_001 | Banana | nucleus | 20.56 | 11.6 |
| GSMUA_Achr7P26780_001 | Banana | nucleus | 19.81 | 11.57 |
| Os02t0194000-01 | Rice | nucleus | 8.6 | 11.39 |
| Os04t0480300-01 | Rice | cytosol | 11.21 | 10.71 |
| Os11t0183700-01 | Rice | mitochondrion | 15.7 | 10.71 |
| Os04t0480400-01 | Rice | nucleus | 5.42 | 10.55 |
| Solyc01g109510.2.1 | Tomato | nucleus | 17.94 | 10.16 |
| CDY46250 | Canola | nucleus | 17.76 | 10.03 |
| KRH24488 | Soybean | nucleus | 18.88 | 9.94 |
| PGSC0003DMT400001865 | Potato | nucleus | 17.01 | 9.63 |
| CDX76281 | Canola | nucleus | 17.2 | 9.54 |
| VIT_03s0063g02410.t01 | Wine grape | nucleus | 18.13 | 9.48 |
| Bra011533.1-P | Field mustard | nucleus | 16.45 | 9.44 |
| AT4G34430.4 | Thale cress | nucleus | 17.38 | 9.43 |
| CDX75433 | Canola | nucleus | 16.45 | 9.41 |
| KRH29482 | Soybean | nucleus | 17.94 | 9.17 |
| Os12t0176700-00 | Rice | nucleus | 14.58 | 9.15 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:12.4.2.1 | ProteinID:BAF13022.1 | ProteinID:BAS86133.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR017884 | EnsemblPlantsGene:Os03g0722100 | EnsemblPlants:Os03t0722100-01 | PFAM:PF16495 |
| PFscan:PS51293 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF62 | UniProt:Q0DP16 | InterPro:SANT_dom | InterPro:SMARCC_C |
| UniParc:UPI0000E121E1 | SEG:seg | : | : | : | : |
Description
SWIRM domain-containing protein CHB706SANT, eukarya domain containing protein. (Os03t0722100-01)
Coordinates
chr3:+:29299399..29302083
Molecular Weight (calculated)
57677.4 Da
IEP (calculated)
4.524
GRAVY (calculated)
-0.878
Length
535 amino acids
Sequence
(BLAST)
(BLAST)
001: IAEHVATKTK AQCMLHFLQM QIEDRFHGDE DINQNIQENT EQASAEKGAA EIPDKMEVEE KAEGKDTAGE KTPEKAEGNS VEAQTEDGNA IENKDANNSG
101: GTDSVKSLNT DEPKKSSDAD PPKSSSDAEP VVKENSVDVD TSRENASNFA IDTLKSAFEA VGYFPEHEGS FADAGNPVMA LASFLAGLVE DDTATNSCRS
201: SLKAISEVSP ALQLATRHCF ILEDPPSDVK DMSGNASTTS TDGDKRKDKD KTQDSIDSEV EGINKKGETV LSVEGKKSSP ISPKGQDTDK KDECDEDPSV
301: DPKHNNGKES DDPVSLDKSV SNNKKGNTME TSNPEMIEDK ASSEVNPADD SSLEGKVEMK KTKDAVANAT TAQEQKQSQI LENGKMEEPK STEDVAADEE
401: NSSRVTANLT DSITRLKRAA ATAISAAAVK AKLLADHEEE QVRQLAALMI DKLYRKVEAK VSFLTEVEHL VQRTREYTEK TRKKLLMERN AIIAARMGSL
501: PSRPNQPGAA GNRLPAGYGG PIVRPPPNAM PRPSS
101: GTDSVKSLNT DEPKKSSDAD PPKSSSDAEP VVKENSVDVD TSRENASNFA IDTLKSAFEA VGYFPEHEGS FADAGNPVMA LASFLAGLVE DDTATNSCRS
201: SLKAISEVSP ALQLATRHCF ILEDPPSDVK DMSGNASTTS TDGDKRKDKD KTQDSIDSEV EGINKKGETV LSVEGKKSSP ISPKGQDTDK KDECDEDPSV
301: DPKHNNGKES DDPVSLDKSV SNNKKGNTME TSNPEMIEDK ASSEVNPADD SSLEGKVEMK KTKDAVANAT TAQEQKQSQI LENGKMEEPK STEDVAADEE
401: NSSRVTANLT DSITRLKRAA ATAISAAAVK AKLLADHEEE QVRQLAALMI DKLYRKVEAK VSFLTEVEHL VQRTREYTEK TRKKLLMERN AIIAARMGSL
501: PSRPNQPGAA GNRLPAGYGG PIVRPPPNAM PRPSS
001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901: YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901: YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV
Arabidopsis Description
CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.