CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46250	Canola	nucleus	69.61	70.86
CDX75433	Canola	nucleus	52.07	53.69
AT4G34430.4	Thale cress	nucleus	47.93	46.86
VIT_03s0063g02410.t01	Wine grape	nucleus	36.41	34.31
Solyc01g109510.2.1	Tomato	nucleus	33.61	34.29
PGSC0003DMT400001865	Potato	nucleus	33.61	34.29
KRH24488	Soybean	nucleus	35.79	33.96
GSMUA_Achr7P26780_001	Banana	nucleus	31.74	33.41
KRH29482	Soybean	nucleus	35.89	33.05
Zm00001d033825_P001	Maize	nucleus	29.88	31.89
EER93546	Sorghum	nucleus	29.98	31.79
GSMUA_Achr3P30500_001	Banana	nucleus	31.22	31.75
Zm00001d013391_P006	Maize	nucleus	29.67	31.33
TraesCS4D01G053300.2	Wheat	nucleus	29.25	30.62
TraesCS4A01G261600.1	Wheat	nucleus	29.36	30.53
HORVU4Hr1G008820.1	Barley	nucleus	29.56	29.91
TraesCS4B01G053000.2	Wheat	nucleus	29.46	29.89
Os04t0110300-02	Rice	plasma membrane	26.56	28.89
EES10369	Sorghum	nucleus	26.97	28.79
Zm00001d004521_P001	Maize	nucleus, plastid	23.44	26.94
CDY23721	Canola	plastid	11.41	23.97
CDX83324	Canola	nucleus	12.03	23.58
CDX95728	Canola	nucleus	12.14	23.49
CDY37705	Canola	plastid	10.79	22.66
CDY04665	Canola	cytosol, nucleus, vacuole	16.49	21.34
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	16.7	21.13
CDX80122	Canola	nucleus	11.2	21.09
CDY08183	Canola	cytosol, nucleus, vacuole	16.29	21.05
CDY66036	Canola	nucleus	11.31	21.0
CDX96578	Canola	nucleus	16.6	20.15
Os03t0722100-01	Rice	cytosol, nucleus	9.54	17.2

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	GO:A0A078CGE7	EnsemblPlants:CDX76281
ProteinID:CDX76281	ProteinID:CDX76281.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00126645001	InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526
InterPro:IPR017884	InterPro:IPR036388	PFAM:PF00249	PFAM:PF00569	PFAM:PF04433	PFAM:PF16495
ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF39
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI0004EF4DDC	InterPro:WH-like_DNA-bd_sf	InterPro:Znf_ZZ	SEG:seg

Description

BnaA08g11190D

Coordinates

chrLK031807:+:114814..119126

Molecular Weight (calculated)

105115.0 Da

IEP (calculated)

4.776

GRAVY (calculated)

-0.782

Length

964 amino acids

Sequence
(BLAST)

001: MDEKRTLALA GDSPASEPSM RRRLKRKANA LGTSNSASAK RMLKREKAML ASFSPVHSGP LTRARQAPSS MPSAAGVKAE VVVGVVGTDG EKLKEEEEER
101: DKAAIREWEA KIEAEFEAVR SRESNVHVVP NHCGWFSWEK IHPLEERSLP SFFNGKLEGR TPEVYREIRD WIMKKFHSDP NTQIEVKDLS ELEVGDSEAK
201: QEVMEFLDYW GLINFHPFPS SPDASSTPGD HDDLGDKESL LNSLYRFQTD EASPALVHKP RPTAQATPSG LFPDPVAPDD LLKQEGPAVE YHCNSCSADC
301: SRKRYHCPTQ ADFDLCTECF DSGKFSSDMS SSDFILMDSA EAPGVGSGKW TDQETLLLLE GLEIFKENFN EIAEHVATKT KAQCMLHFLQ MPIEDAFLNQ
401: FDYKVPSTKD TTDSAVSKDD KSVQKEAPEE TENKNPVKEA ETVKKTPETE DDNEGNVPPE SSKPGDASEE TSEVEAEQKT LKVETDTDER CKDDADENVA
501: LKALTEAFEE LGYPITPEAS LSFADLGNPV MGLAAFLVRL AGSDVATASA RASINSLKSN SGLLLATRHC FVLEDPLDNK KDSAESKSVD AVGNGDSAHK
601: DEQPEEKSQK AEGVSLNAND REMTEADSGK ENQDSVSEEK QPGSRTKKSA RKPDAKGLKK STNSVATEKS EEPADIICTS QDKCSGKELQ EPLKDGNKLS
701: SENKDASQAT VSQLAPDASQ PEASKDVEMK DMSQSQKDPQ DMVKTVGEEI EQAKKNAKDV LSMPDTSVAQ QAIASPSVPE NGPDGENTKK EKDVSEETKD
801: KHNTDKLKRA AISALSAAAV KAKHLAKQEE DHIRQLSGSL IEKQLRKLEA KLSIFNDAES LTVRVKEQLE RSRQRLYHER AQIIATRLGA PPSMSSKASL
901: PTNRTAANLA NVAQRPPMGM SFPRPPMPRP PGASPFSVPG SHVAATAMSG SSGPPQGSDN VSSV

Best Arabidopsis Sequence Match ( AT4G34430.3 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSADAEG NDDNSHKDDQ PEEKSKKAEE VSLNSDDREM PDTDTGKETQ DSVSEEKQPG SRTENSTTKL DAVQEKRSSK PVTTDNSEKP VDIICPSQDK
701: CSGKELQEPL KDGNKLSSEN KDASQSTVSQ SAADASQPEA SRDVEMKDTL QSEKDPEDVV KTVGEKVQLA KEEGANDVLS TPDKSVSQQP IGSASAPENG
801: TAGGNPNIEG KKEKDICEGT KDKYNIEKLK RAAISAISAA AVKAKNLAKQ EEDQIRQLSG SLIEKQLHKL EAKLSIFNEA ESLTMRVREQ LERSRQRLYH
901: ERAQIIAARL GVPPSMSSKA SLPTNRIAAN FANVAQRPPM GMAFPRPPMP RPPGFPVPGS FVAATTMTGS SDPSPGSDNV SSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.