Factsheet for Zm00001d033825_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93546	Sorghum	nucleus	90.14	89.55
Zm00001d013391_P006	Maize	nucleus	88.04	87.08
TraesCS4D01G053300.2	Wheat	nucleus	69.88	68.51
TraesCS4A01G261600.1	Wheat	nucleus	69.88	68.07
TraesCS4B01G053000.2	Wheat	nucleus	70.76	67.26
HORVU4Hr1G008820.1	Barley	nucleus	69.88	66.21
GSMUA_Achr3P30500_001	Banana	nucleus	35.11	33.44
GSMUA_Achr7P26780_001	Banana	nucleus	33.33	32.86
CDX76281	Canola	nucleus	31.89	29.88
Zm00001d004521_P001	Maize	nucleus, plastid	27.46	29.56
PGSC0003DMT400001865	Potato	nucleus	30.56	29.21
CDY46250	Canola	nucleus	30.56	29.14
Solyc01g109510.2.1	Tomato	nucleus	30.34	28.99
CDX75433	Canola	nucleus	29.57	28.56
Bra011533.1-P	Field mustard	nucleus	29.35	28.43
AT4G34430.4	Thale cress	nucleus	30.79	28.19
KRH24488	Soybean	nucleus	30.12	26.77
KRH29482	Soybean	nucleus	30.01	25.88
VIT_03s0063g02410.t01	Wine grape	nucleus	28.9	25.51
Os03t0722100-01	Rice	cytosol, nucleus	14.62	24.67
Zm00001d053687_P001	Maize	plastid	11.52	20.76
Zm00001d041847_P002	Maize	nucleus	16.06	18.76
Zm00001d000110_P003	Maize	mitochondrion	16.28	18.75
Zm00001d003284_P001	Maize	nucleus	12.4	12.7

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:103643932	MapMan:12.4.2.1	Gene3D:3.30.60.90	UniProt:A0A1D6L2M8
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872
InterPro:Homeobox-like_sf	InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	ProteinID:ONM08716.1
ProteinID:ONM08722.1	PFAM:PF00249	PFAM:PF00569	PFAM:PF04433	PFAM:PF16495	ScanProsite:PS01357
PFscan:PS50135	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF62	InterPro:SANT/Myb
InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	SUPFAM:SSF57850
InterPro:SWIRM	UniParc:UPI000221551A	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d033825	EnsemblPlants:Zm00001d033825_P001	EnsemblPlants:Zm00001d033825_T001
InterPro:Znf_ZZ	SEG:seg	:	:	:	:

Description

MYB-related-transcription factor 53SWI/SNF complex subunit SWI3D

Coordinates

chr1:+:274885788..274896921

Molecular Weight (calculated)

98088.1 Da

IEP (calculated)

4.751

GRAVY (calculated)

-0.634

Length

903 amino acids

Sequence
(BLAST)

001: MEAKPSSAAH GDAPAVEAPR RRGSGGKRKS AGSSFTPSKR QAKERNAAFH VPQHLLHSGP LTRAARHSPH KLAGTPPESG PASSSAATGD GVSGGQAEVD
101: AIRPETEETP APELPLVDEM LEAVRSRGPG VHVVPTFAGW FSWKEIHSVE KQILPSFFNG KSVKRTPEVY LAIRNSIMMK FHANPQLQLE SKDLAELSIG
201: ESDARQEVLE FLDHWGLINF HPFPPAGHEE SKPEESQDNS NDEKASLIEQ LFKFESVQSY MTPLLNKEDV GAPPPLPSLF PEPVLIENMV AAAEPSVEYH
301: CNSCSVDCSR KRYHCRTQAD FDLCCVCYNE GKFDPGMAKT DFILMDSAEV SGASGTSWTD EETLLLLEGL EIFGGKWAEI AEHVATKTKA QCMLHFLQMQ
401: IEDRFHDGDD INQNIPVSTE QATTEKAIVE TPEKMEVGDK VEGRDNADEK ASEKTEGSCE ETKTEDANVV NKDTQKSGGK DSGASPSTEE AKQSSDDQPI
501: VKENSVDVDT SGEKLSNVAI DILKCAFEAA GHSPEYEGSF ADAGNPVIAL AAYLAGLVED GNATTSFRSS LKSISEVPPA LQLASRHCFI LEDPPNELKD
601: ICVSVSKKNT DADQTKDEDM ISNSIANEKK EINEKEDKSL SVEKTNNSSM SQNDHQESNI KSVSRDDCSS VEPKGNNAKE SSDSTGIGDM SAIGTTKDVV
701: AGNSKQVNDS PSVEVEAPDD SSLKSKDELN DTEDAVATPA TVQEQKHSQT LENGDKAEPN NIERVVVHEK GSIVTANQND SITRLKRAAA TAVSAAAVKA
801: KFLGDQEEYH IRRLTALMIE KLFQKLEVKM SLFSEIEQVV LRTREYTEKT RKKLLMERNA IIAARMGALP SRPNQPGVAG NRLPPGYGNP PLRSPNAMPR
901: PSS

Best Arabidopsis Sequence Match ( AT4G34430.3 )
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSADAEG NDDNSHKDDQ PEEKSKKAEE VSLNSDDREM PDTDTGKETQ DSVSEEKQPG SRTENSTTKL DAVQEKRSSK PVTTDNSEKP VDIICPSQDK
701: CSGKELQEPL KDGNKLSSEN KDASQSTVSQ SAADASQPEA SRDVEMKDTL QSEKDPEDVV KTVGEKVQLA KEEGANDVLS TPDKSVSQQP IGSASAPENG
801: TAGGNPNIEG KKEKDICEGT KDKYNIEKLK RAAISAISAA AVKAKNLAKQ EEDQIRQLSG SLIEKQLHKL EAKLSIFNEA ESLTMRVREQ LERSRQRLYH
901: ERAQIIAARL GVPPSMSSKA SLPTNRIAAN FANVAQRPPM GMAFPRPPMP RPPGFPVPGS FVAATTMTGS SDPSPGSDNV SSV

Arabidopsis Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.