Factsheet for AT4G34430.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46250	Canola	nucleus	53.65	55.86
Bra011533.1-P	Field mustard	nucleus	48.48	51.29
CDX75433	Canola	nucleus	48.58	51.23
CDX76281	Canola	nucleus	46.86	47.93
PGSC0003DMT400001865	Potato	nucleus	36.92	38.52
Solyc01g109510.2.1	Tomato	nucleus	35.7	37.25
VIT_03s0063g02410.t01	Wine grape	nucleus	38.03	36.66
KRH24488	Soybean	nucleus	37.12	36.02
GSMUA_Achr7P26780_001	Banana	nucleus	32.15	34.61
KRH29482	Soybean	nucleus	36.61	34.48
GSMUA_Achr3P30500_001	Banana	nucleus	32.56	33.86
Zm00001d013391_P006	Maize	nucleus	28.7	31.0
EER93546	Sorghum	nucleus	28.5	30.91
TraesCS4D01G053300.2	Wheat	nucleus	28.8	30.84
Zm00001d033825_P001	Maize	nucleus	28.19	30.79
TraesCS4A01G261600.1	Wheat	nucleus	28.7	30.53
HORVU4Hr1G008820.1	Barley	nucleus	29.21	30.22
TraesCS4B01G053000.2	Wheat	nucleus	28.8	29.89
Os04t0110300-02	Rice	plasma membrane	26.47	29.46
EES10369	Sorghum	nucleus	26.37	28.79
Zm00001d004521_P001	Maize	nucleus, plastid	20.89	24.55
AT2G33610.1	Thale cress	nucleus	11.46	24.09
AT1G21700.1	Thale cress	nucleus	17.95	21.93
AT2G47620.1	Thale cress	nucleus	11.36	21.88
Os03t0722100-01	Rice	cytosol, nucleus	9.43	17.38

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	Gene3D:3.30.60.90	EntrezGene:829594	ProteinID:AEE86374.1
ArrayExpress:AT4G34430	EnsemblPlantsGene:AT4G34430	RefSeq:AT4G34430	TAIR:AT4G34430	RefSeq:AT4G34430-TAIR-G	EnsemblPlants:AT4G34430.4
TAIR:AT4G34430.4	Unigene:At.28075	Symbol:CHB3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0008270	InterPro:Homeobox-like_sf	InterPro:IPR000433
InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388	RefSeq:NP_974682.1	PFAM:PF00249	PFAM:PF00569
PFAM:PF04433	PFAM:PF16495	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	ScanProsite:PS01357	PFscan:PS50135
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF39	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00291	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM
UniParc:UPI000034F171	InterPro:WH-like_DNA-bd_sf	InterPro:Znf_ZZ	SEG:seg	:	:

Description

CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]

Coordinates

chr4:+:16460920..16465323

Molecular Weight (calculated)

107930.0 Da

IEP (calculated)

4.624

GRAVY (calculated)

-0.778

Length

986 amino acids

Sequence
(BLAST)

001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQQL HKLEAKLSIF NEAESLTMRV REQLERSRQR
901: LYHERAQIIA ARLGVPPSMS SKASLPTNRI AANFANVAQR PPMGMAFPRP PMPRPPGFPV PGSFVAATTM TGSSDPSPGS DNVSSV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.