Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G053300.2 | Wheat | nucleus | 90.56 | 93.7 |
| TraesCS4A01G261600.1 | Wheat | nucleus | 90.24 | 92.77 |
| TraesCS4B01G053000.2 | Wheat | nucleus | 92.34 | 92.63 |
| EER93546 | Sorghum | nucleus | 66.84 | 70.08 |
| Zm00001d033825_P001 | Maize | nucleus | 66.21 | 69.88 |
| Zm00001d013391_P006 | Maize | nucleus | 66.53 | 69.44 |
| GSMUA_Achr7P26780_001 | Banana | nucleus | 34.1 | 35.48 |
| GSMUA_Achr3P30500_001 | Banana | nucleus | 34.52 | 34.7 |
| CDX76281 | Canola | nucleus | 29.91 | 29.56 |
| Bra011533.1-P | Field mustard | nucleus | 28.65 | 29.29 |
| AT4G34430.4 | Thale cress | nucleus | 30.22 | 29.21 |
| CDX75433 | Canola | nucleus | 28.65 | 29.2 |
| CDY46250 | Canola | nucleus | 28.86 | 29.04 |
| Solyc01g109510.2.1 | Tomato | nucleus | 28.54 | 28.78 |
| PGSC0003DMT400001865 | Potato | nucleus | 28.23 | 28.47 |
| KRH24488 | Soybean | nucleus | 29.7 | 27.85 |
| KRH29482 | Soybean | nucleus | 29.7 | 27.03 |
| VIT_03s0063g02410.t01 | Wine grape | nucleus | 28.33 | 26.39 |
| HORVU2Hr1G082870.3 | Barley | mitochondrion | 5.46 | 25.12 |
| Os03t0722100-01 | Rice | cytosol, nucleus | 13.85 | 24.67 |
| HORVU6Hr1G034070.2 | Barley | plastid | 11.44 | 21.93 |
| HORVU4Hr1G017950.27 | Barley | nucleus | 11.33 | 20.3 |
| HORVU5Hr1G037060.1 | Barley | nucleus, plastid | 16.58 | 19.08 |
| HORVU2Hr1G082880.12 | Barley | nucleus | 7.45 | 18.68 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | Gene3D:3.30.60.90 | EMBL:AK362898 | UniProt:F2DG81 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | GO:GO:0046872 | EnsemblPlantsGene:HORVU4Hr1G008820 |
| EnsemblPlants:HORVU4Hr1G008820.1 | InterPro:Homeobox-like_sf | InterPro:IPR000433 | InterPro:IPR007526 | InterPro:IPR017884 | InterPro:IPR036388 |
| PFAM:PF00249 | PFAM:PF00569 | PFAM:PF04433 | PFAM:PF16495 | ScanProsite:PS01357 | PFscan:PS50135 |
| PFscan:PS50934 | PFscan:PS51293 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF62 | InterPro:SANT/Myb | InterPro:SANT_dom |
| SMART:SM00291 | SMART:SM00717 | InterPro:SMARCC_C | SUPFAM:SSF46689 | SUPFAM:SSF57850 | InterPro:SWIRM |
| UniParc:UPI00020067B0 | InterPro:WH-like_DNA-bd_sf | InterPro:Znf_ZZ | SEG:seg | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DG81]
Coordinates
chrchr4H:-:24979535..24985488
Molecular Weight (calculated)
102858.0 Da
IEP (calculated)
4.531
GRAVY (calculated)
-0.688
Length
953 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPKPAPAAH GDGAPAEAPR RRGGGGKRKA SGSSFTPSKR HAKERNAAFH APSHMLHSGP LTRAARQSPH KLSTAPADAA PAAAVPGGSG PGEGAAIRAD
101: EVQTPAEETP LVDEGFEAVR SRGTGVHVVP TFAGWFSWKE IHQVEKQTLP SFFNGKSEQR TPEIYSGIRN SILMKFHANP QLQLEPKDLA ELSVGEVDAR
201: QEVFDFLDHW GLINFHPFPP ADLEESKPEE SQSDSLNEEK ASLIEKLFKF EPIQSYMIPL PNKGDVEIPV PLPSLLPDPV LVEDVIAAAE PSVEYHCNSC
301: SVDCSGKRYH CRTQADFDLC SNCYNEEKFD PGMSKTDFIL MDSTEVSGAR GTSWTDEETL LLLEALEIFG GKWTEIAEHV ATKTKTQCML HFLQMQIEDH
401: FHDGDDIHQN IQENTEQALA EKGTPEVPEK MEIEEKVEGK DTEDEKPSEK TEGNHTEEKT EEGSVVENKD AKNSGGADSV TTPNVDDPKP SSDTDLAKEN
501: SVNLDTSDKN ASDVAIDISG ENAPNNAIDI LKSAFEAVGH FPGHEGSFAD AGNPVMALAA FLAGLVEDDN ATTSCRSSLK AISEDSPALQ LASRHCYILE
601: DPPSDLKDIF VSVSNTIKDD DQAKDDDMVI DSTGTEKKDI NEKEENVVSV EKQNSPSISP KDNQESDNKN VSCDNEAPTV EPKSIKAKES DDPIPMVDKS
701: ASNDTKIPSS STKDSVAPEN SANGCGLTAS QEVVAGSTTS ATNPELLKDK QNPELLKDKP SSKVEPDDDS PSQGKIELNK TEDAVATPTA VQEDEKTHTL
801: GNGKLEEPNI AENAPADGET GSRVTAEHSD SLTRLKRAAA TAVSAAAAKA KLLAAQEEDQ IRRLAALVVE KLLQKTEAKM SLFADVEHVA LRTREYTEKT
901: RKKLLMERNA IIAARMGALP SRPNQQGAPG NRLPPGYGAP AVRPPNAMPR PSS
101: EVQTPAEETP LVDEGFEAVR SRGTGVHVVP TFAGWFSWKE IHQVEKQTLP SFFNGKSEQR TPEIYSGIRN SILMKFHANP QLQLEPKDLA ELSVGEVDAR
201: QEVFDFLDHW GLINFHPFPP ADLEESKPEE SQSDSLNEEK ASLIEKLFKF EPIQSYMIPL PNKGDVEIPV PLPSLLPDPV LVEDVIAAAE PSVEYHCNSC
301: SVDCSGKRYH CRTQADFDLC SNCYNEEKFD PGMSKTDFIL MDSTEVSGAR GTSWTDEETL LLLEALEIFG GKWTEIAEHV ATKTKTQCML HFLQMQIEDH
401: FHDGDDIHQN IQENTEQALA EKGTPEVPEK MEIEEKVEGK DTEDEKPSEK TEGNHTEEKT EEGSVVENKD AKNSGGADSV TTPNVDDPKP SSDTDLAKEN
501: SVNLDTSDKN ASDVAIDISG ENAPNNAIDI LKSAFEAVGH FPGHEGSFAD AGNPVMALAA FLAGLVEDDN ATTSCRSSLK AISEDSPALQ LASRHCYILE
601: DPPSDLKDIF VSVSNTIKDD DQAKDDDMVI DSTGTEKKDI NEKEENVVSV EKQNSPSISP KDNQESDNKN VSCDNEAPTV EPKSIKAKES DDPIPMVDKS
701: ASNDTKIPSS STKDSVAPEN SANGCGLTAS QEVVAGSTTS ATNPELLKDK QNPELLKDKP SSKVEPDDDS PSQGKIELNK TEDAVATPTA VQEDEKTHTL
801: GNGKLEEPNI AENAPADGET GSRVTAEHSD SLTRLKRAAA TAVSAAAAKA KLLAAQEEDQ IRRLAALVVE KLLQKTEAKM SLFADVEHVA LRTREYTEKT
901: RKKLLMERNA IIAARMGALP SRPNQQGAPG NRLPPGYGAP AVRPPNAMPR PSS
001: MEEKRRDSAG TLAFAGSSGD SPASEPMPAP RRRGGGLKRK ANALGGSNFF SSAPSKRMLT REKAMLASFS PVHNGPLTRA RQAPSIMPSA ADGVKSEVLN
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901: YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV
101: VAVGADGEKP KEEEERNKAI REWEALEAKI EADFEAIRSR DSNVHVVPNH CGWFSWEKIH PLEERSLPSF FNGKLEGRTS EVYREIRNWI MGKFHSNPNI
201: QIELKDLTEL EVGDSEAKQE VMEFLDYWGL INFHPFPPTD TGSTASDHDD LGDKESLLNS LYRFQVDEAC PPLVHKPRFT AQATPSGLFP DPMAADELLK
301: QEGPAVEYHC NSCSADCSRK RYHCPKQADF DLCTECFNSG KFSSDMSSSD FILMEPAEAP GVGSGKWTDQ ETLLLLEALE IFKENWNEIA EHVATKTKAQ
401: CMLHFLQMPI EDAFLDQIDY KDPISKDTTD LAVSKDDNSV LKDAPEEAEN KKRVDEDETM KEVPEPEDGN EEKVSQESSK PGDASEETNE MEAEQKTPKL
501: ETAIEERCKD EADENIALKA LTEAFEDVGH SSTPEASFSF ADLGNPVMGL AAFLVRLAGS DVATASARAS IKSLHSNSGM LLATRHCYIL EDPPDNKKDP
601: TKSKSCSADA EGNDDNSHKD DQPEEKSKKA EEVSLNSDDR EMPDTDTGKE TQDSVSEEKQ PGSRTENSTT KLDAVQEKRS SKPVTTDNSE KPVDIICPSQ
701: DKCSGKELQE PLKDGNKLSS ENKDASQSTV SQSAADASQP EASRDVEMKD TLQSEKDPED VVKTVGEKVQ LAKEEGANDV LSTPDKSVSQ QPIGSASAPE
801: NGTAGGNPNI EGKKEKDICE GTKDKYNIEK LKRAAISAIS AAAVKAKNLA KQEEDQIRQL SGSLIEKQLH KLEAKLSIFN EAESLTMRVR EQLERSRQRL
901: YHERAQIIAA RLGVPPSMSS KASLPTNRIA ANFANVAQRP PMGMAFPRPP MPRPPGFPVP GSFVAATTMT GSSDPSPGSD NVSSV
Arabidopsis Description
CHB3DNA-binding family protein [Source:TAIR;Acc:AT4G34430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.