Factsheet for HORVU2Hr1G082880.12

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G004700.1
HORVU2Hr1G082880.12
HORVU3Hr1G111760.2
HORVU4Hr1G017950.27
HORVU5Hr1G037060.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	HORVU4Hr1G017950.27	AT1G21700.1	16055636
AT2G47620.1	HORVU5Hr1G037060.1	AT1G21700.1	16055636
AT2G47620.1	HORVU2Hr1G082880.12	AT2G47620.1	16055636
AT2G47620.1	HORVU0Hr1G004700.1	AT5G52650.1	21798944
AT2G47620.1	HORVU3Hr1G111760.2	AT5G52650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G337400.1	Wheat	nucleus	87.63	59.89
TraesCS2B01G356600.1	Wheat	nucleus	84.21	57.45
Os04t0480300-01	Rice	cytosol	62.63	42.5
EES10999	Sorghum	nucleus	57.63	39.46
GSMUA_Achr9P16230_001	Banana	nucleus	41.58	27.38
Zm00001d003284_P001	Maize	nucleus	58.16	25.06
CDX83324	Canola	nucleus	30.26	23.37
KRH64580	Soybean	nucleus	31.32	22.58
KRH53340	Soybean	nucleus	31.05	22.56
Bra004441.1-P	Field mustard	nucleus	30.26	22.37
CDX80122	Canola	nucleus	30.0	22.27
CDX95728	Canola	nucleus	28.68	21.89
VIT_17s0000g00990.t01	Wine grape	cytosol	31.58	21.31
AT2G47620.1	Thale cress	nucleus	28.42	21.09
CDY66036	Canola	nucleus	28.68	21.0
Solyc03g097450.2.1	Tomato	nucleus	27.63	18.32
HORVU6Hr1G034070.2	Barley	plastid	17.37	13.28
HORVU5Hr1G037060.1	Barley	nucleus, plastid	18.42	8.45
HORVU4Hr1G017950.27	Barley	nucleus	10.79	7.71
HORVU4Hr1G008820.1	Barley	nucleus	18.68	7.45
HORVU2Hr1G082870.3	Barley	mitochondrion	3.42	6.28

Protein Annotations

Gene3D:1.10.10.60	MapMan:12.4.2.1	UniProt:A0A287INX9	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
EnsemblPlantsGene:HORVU2Hr1G082880	EnsemblPlants:HORVU2Hr1G082880.12	InterPro:Homeobox-like_sf	InterPro:IPR017884	PFAM:PF00249	PFAM:PF16495
PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF41	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717
InterPro:SMARCC_C	SUPFAM:SSF46689	UniParc:UPI000B47B51B	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:-:602520092..602523175

Molecular Weight (calculated)

42458.9 Da

IEP (calculated)

4.948

GRAVY (calculated)

-0.574

Length

380 amino acids

Sequence
(BLAST)

001: QNDQMASSYD ENEGNYVPSN AYAFSLQDGF KVCSTCCKTN STNKEEANKC SIVKKESSDN HASSAWTDAE TLLLLEGVLK HGDDWDLITQ HVRTKNKTEC
101: IARLIQLPFG EHMLGNINGK SDSRFQTNQT TDGKTNHFIV KDASSQSTDM VDGMQIDGEE DGADKLVEDH PSKRRRLCSS IDVTSSLMEQ LALLTTAVSP
201: DVVAAAAAAS VKALGNENPQ AKKAFHFIEK EYQVKSFSSN HVQESDCNVG NKEAEMHGQT VPDEKMEKKF ISTAYQVRAA VGTAVGVAAA RAKMLVDQEE
301: REMELLMASI IETQLRKIQY KIKHFDELEL IMDQEYNTIQ QIKESLMKEW QTVLERAFQT GAPLQRDEVL TRLFLDRSTP

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.