CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80122
CDX83324
CDX95728
CDX96578
CDY04665
CDY08183
CDY27840
CDY51832
CDY56154
CDY58587
CDY66036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	CDX96578	AT1G21700.1	16055636
AT2G47620.1	CDY04665	AT1G21700.1	16055636
AT2G47620.1	CDY08183	AT1G21700.1	16055636
AT2G47620.1	CDY58587	AT1G21700.1	16055636
AT2G47620.1	CDX80122	AT2G47620.1	16055636
AT2G47620.1	CDX83324	AT2G47620.1	16055636
AT2G47620.1	CDX95728	AT2G47620.1	16055636
AT2G47620.1	CDY66036	AT2G47620.1	16055636
AT2G47620.1	CDY27840	AT5G52650.1	21798944
AT2G47620.1	CDY51832	AT5G52650.1	21798944
AT2G47620.1	CDY56154	AT5G52650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95728	Canola	nucleus	86.59	85.54
CDX80122	Canola	nucleus	72.76	69.92
CDY66036	Canola	nucleus	72.56	68.79
AT2G47620.1	Thale cress	nucleus	70.33	67.58
KRH53340	Soybean	nucleus	48.37	45.51
KRH64580	Soybean	nucleus	46.54	43.45
VIT_17s0000g00990.t01	Wine grape	cytosol	48.17	42.1
Solyc03g097450.2.1	Tomato	nucleus	42.89	36.82
GSMUA_Achr9P16230_001	Banana	nucleus	41.87	35.7
EES10999	Sorghum	nucleus	37.6	33.33
Os04t0480300-01	Rice	cytosol	37.8	33.21
TraesCS2B01G356600.1	Wheat	nucleus	37.6	33.21
TraesCS2D01G337400.1	Wheat	nucleus	35.98	31.83
HORVU2Hr1G082880.12	Barley	nucleus	23.37	30.26
CDY23721	Canola	plastid	23.58	25.27
CDY37705	Canola	plastid	23.17	24.84
Zm00001d003284_P001	Maize	nucleus	36.79	20.52
CDY04665	Canola	cytosol, nucleus, vacuole	23.98	15.84
CDY08183	Canola	cytosol, nucleus, vacuole	23.78	15.68
CDY58587	Canola	cytosol, endoplasmic reticulum, nucleus	23.17	14.96
CDX96578	Canola	nucleus	22.97	14.23
CDX76281	Canola	nucleus	23.58	12.03
CDX75433	Canola	nucleus	22.36	11.76
CDY46250	Canola	nucleus	22.15	11.51

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	GO:A0A078D4T6	EnsemblPlants:CDX83324	ProteinID:CDX83324
ProteinID:CDX83324.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00138886001	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388
PFAM:PF00249	PFAM:PF04433	PFAM:PF16495	PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802
PANTHER:PTHR12802:SF41	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689
InterPro:SWIRM	UniParc:UPI0004EDEEE0	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

BnaA03g21820D

Coordinates

chrLK031832:-:1049874..1052915

Molecular Weight (calculated)

54837.8 Da

IEP (calculated)

4.553

GRAVY (calculated)

-0.341

Length

492 amino acids

Sequence
(BLAST)

001: MEVSTKDAEL ELFTIPAHSS WFVWEDIHEI ERREFAEFFS ESSITRTPKV YKEYRDFIIN KYREDSSKRL TFTSIRKYLV GDVNLLRKVF LFLENWGLIN
101: YLQRSDDGSV EESEAKIEQG TPAGIRVTAT PVSMRPLTVP PLVEERAEPA FKFSPLTSYS DVFTGSKKPL VCGHCGGESS CDSAFYQHTK SLVSLCDKCF
201: KNGDSPDDFK LIAAASWTEE ETLLLLESVL KHGDDWDLIA QSVSTKSRLD CISKLIELPF GEFLMGSSSG RLRSSIPTSE DENLSEEKGE DHVVDEEEPP
301: AKRKRVAMLS DGGDSSLMKQ VAAMACKVGP SVATAAAKAA IAALCDEASC PTDTFETTCD FTDFAVDRAD GDKGTLDMEE HQEDKEGPQD LPVALRMRAS
401: VATALGAAAA HAKILADQEE REMEQLAAII IDQQLKKMKS KLKFLDHLEL IMDAEEQVME GVKETILQER ISVLEFAFGS GITKRWDHTY VK

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.