Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52650.1 | CDX90062 | AT1G01800.1 | 21798944 |
| AT5G52650.1 | CDY15148 | AT1G01800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003118.1-P | Field mustard | cytosol | 84.77 | 93.3 |
| AT5G52650.1 | Thale cress | cytosol | 83.25 | 91.62 |
| CDY49476 | Canola | cytosol | 84.77 | 80.68 |
| CDX89397 | Canola | extracellular | 85.28 | 78.87 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 86.29 | 77.98 |
| Os01t0962600-01 | Rice | plastid | 68.02 | 74.86 |
| GSMUA_Achr11P... | Banana | cytosol | 51.78 | 74.45 |
| Os04t0430100-01 | Rice | nucleus | 69.04 | 74.32 |
| Os02t0549600-01 | Rice | cytosol | 69.04 | 74.32 |
| Zm00001d011816_P001 | Maize | plastid | 66.5 | 73.18 |
| EES10818 | Sorghum | cytosol | 68.02 | 72.83 |
| CDX92731 | Canola | cytosol | 84.26 | 72.81 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 65.99 | 72.63 |
| CDY39734 | Canola | cytosol | 71.57 | 72.31 |
| Zm00001d003672_P001 | Maize | plastid | 65.99 | 71.82 |
| CDY51832 | Canola | plastid | 85.79 | 71.61 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 49.75 | 71.53 |
| EES04270 | Sorghum | cytosol | 64.97 | 71.51 |
| Zm00001d042023_P001 | Maize | plastid | 64.97 | 71.51 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 67.01 | 70.21 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 67.01 | 70.21 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 67.01 | 70.21 |
| CDX94419 | Canola | mitochondrion | 84.77 | 69.58 |
| CDY35037 | Canola | cytosol | 70.56 | 68.14 |
| CDY44470 | Canola | cytosol | 71.07 | 66.67 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 84.26 | 66.4 |
| CDY66010 | Canola | cytosol | 84.77 | 64.98 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 68.02 | 64.42 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 68.02 | 61.75 |
| Zm00001d048305_P001 | Maize | cytosol | 45.69 | 61.22 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 70.05 | 56.33 |
| GSMUA_AchrUn_... | Banana | extracellular | 66.5 | 56.22 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 68.53 | 56.02 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 70.05 | 50.0 |
| CDX67498 | Canola | extracellular | 70.56 | 29.76 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | UniProt:A0A078GMM8 | EnsemblPlants:CDY27840 | ProteinID:CDY27840 | ProteinID:CDY27840.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0016020 | GO:GO:0022626 | GO:GO:0022627 | GO:GO:0030312 |
| GO:GO:0042788 | EnsemblPlantsGene:GSBRNA2T00038673001 | InterPro:IPR036388 | PFAM:PF03501 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 |
| InterPro:Rps10 | InterPro:S10_plectin_N | UniParc:UPI0004EDB2BF | InterPro:WH-like_DNA-bd_sf | SEG:seg | : |
Description
BnaC09g28670D40S ribosomal protein S10-3 [Source:Projected from Arabidopsis thaliana (AT5G52650) UniProtKB/Swiss-Prot;Acc:Q9LTF2]
Coordinates
chrLK032210:-:398646..400156
Molecular Weight (calculated)
21884.0 Da
IEP (calculated)
9.932
GRAVY (calculated)
-0.625
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHLSSPFDL SRHSTLWFQI ISEENRREIC KYLFKEGVCF AKKDFNLAKH PLIESVPNLQ VIKLMQHFKS KEYVRETFAW MHYYWFLTNE GIEFLRTYLN
101: LPSDVVPATL KKSAKPIGRP FGGPPGDRPR GPRFEGADRP RYGDRDGYRA GPRGGEGEKG GAPADYQPSF QGSGGRPGFG RGAGGYGAAA PSGSGLP
101: LPSDVVPATL KKSAKPIGRP FGGPPGDRPR GPRFEGADRP RYGDRDGYRA GPRGGEGEKG GAPADYQPSF QGSGGRPGFG RGAGGYGAAA PSGSGLP
001: MIISEANRKE ICKYLFKEGV CFAKKDFNLA KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRS RGPRHEGGDR PRFGDRDGYR AGPRAGGEFG GEKGGAPADY QPSFQGSGRG FGRGAGGYSA AAPSGSGLP
101: PFGGPPGDRS RGPRHEGGDR PRFGDRDGYR AGPRAGGEFG GEKGGAPADY QPSFQGSGRG FGRGAGGYSA AAPSGSGLP
Arabidopsis Description
RPS10C40S ribosomal protein S10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTF2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.