Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019143.1-P | Field mustard | cytosol | 72.0 | 99.45 |
| AT4G25740.1 | Thale cress | cytosol | 66.0 | 93.22 |
| CDX92731 | Canola | cytosol | 77.6 | 85.09 |
| CDY49476 | Canola | cytosol | 70.0 | 84.54 |
| CDY27840 | Canola | cytosol | 66.4 | 84.26 |
| CDX89397 | Canola | extracellular | 70.4 | 82.63 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 67.6 | 77.52 |
| Os01t0962600-01 | Rice | plastid | 54.4 | 75.98 |
| CDX94419 | Canola | mitochondrion | 72.0 | 75.0 |
| Os04t0430100-01 | Rice | nucleus | 54.8 | 74.86 |
| Os02t0549600-01 | Rice | cytosol | 54.8 | 74.86 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 53.6 | 74.86 |
| Zm00001d011816_P001 | Maize | plastid | 53.2 | 74.3 |
| GSMUA_Achr11P... | Banana | cytosol | 40.4 | 73.72 |
| EES10818 | Sorghum | cytosol | 54.0 | 73.37 |
| EES04270 | Sorghum | cytosol | 52.4 | 73.18 |
| Zm00001d042023_P001 | Maize | plastid | 52.4 | 73.18 |
| Zm00001d003672_P001 | Maize | plastid | 52.4 | 72.38 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 54.4 | 72.34 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 54.0 | 71.81 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 54.0 | 71.81 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 39.2 | 71.53 |
| CDY51832 | Canola | plastid | 67.2 | 71.19 |
| CDY39734 | Canola | cytosol | 55.2 | 70.77 |
| CDY35037 | Canola | cytosol | 56.0 | 68.63 |
| CDY66010 | Canola | cytosol | 69.2 | 67.32 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 54.4 | 65.38 |
| CDY44470 | Canola | cytosol | 54.4 | 64.76 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 55.6 | 64.06 |
| Zm00001d048305_P001 | Maize | cytosol | 36.4 | 61.9 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 56.8 | 57.96 |
| GSMUA_AchrUn_... | Banana | extracellular | 53.2 | 57.08 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 54.8 | 56.85 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 56.8 | 51.45 |
| CDX67498 | Canola | extracellular | 56.8 | 30.41 |
Protein Annotations
| EnsemblPlants:CDY50187 | EnsemblPlantsGene:GSBRNA2T00096118001 | Gene3D:1.10.10.10 | InterPro:IPR036388 | InterPro:Rps10 | InterPro:S10_plectin_N |
| InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | PFAM:PF03501 | ProteinID:CDY50187 | ProteinID:CDY50187.1 |
| SEG:seg | UniParc:UPI0004EEB172 | UniProt:A0A078IJV5 | MapMan:17.1.3.1.11 | : | : |
Description
BnaA03g47610DBnaA03g47610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJV5]
Coordinates
chrLK032888:+:17476..21662
Molecular Weight (calculated)
28139.1 Da
IEP (calculated)
10.541
GRAVY (calculated)
-0.435
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLLKFSIFS IFFIYGSNRI FFKILKHCGY PRHRIYRWLK IESTRKLPNT QIFDMSLCPF AAKSLSTKTM IISETNRREI CKYLFKEGVL FAKKDFNLPK
101: HPLIESVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFFRTYL NLPSDVVPAT LKKSAKPIGR PFGGPPGDRP RGPPRFDGDR PRYGDRDGYR
201: GGQRGGDVGG EKGGAPADYQ PSFQGGGGRP GFGRGAGGFS AAAPSGSGLP
101: HPLIESVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFFRTYL NLPSDVVPAT LKKSAKPIGR PFGGPPGDRP RGPPRFDGDR PRYGDRDGYR
201: GGQRGGDVGG EKGGAPADYQ PSFQGGGGRP GFGRGAGGFS AAAPSGSGLP
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.