Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G25740.1 | Thale cress | cytosol | 79.71 | 93.22 |
| CDY27840 | Canola | cytosol | 80.68 | 84.77 |
| CDX89397 | Canola | extracellular | 85.99 | 83.57 |
| CDX92731 | Canola | cytosol | 85.02 | 77.19 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 81.16 | 77.06 |
| Os01t0962600-01 | Rice | plastid | 65.22 | 75.42 |
| Os04t0430100-01 | Rice | nucleus | 66.67 | 75.41 |
| Os02t0549600-01 | Rice | cytosol | 66.67 | 75.41 |
| GSMUA_Achr11P... | Banana | cytosol | 49.76 | 75.18 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 64.73 | 74.86 |
| EES10818 | Sorghum | cytosol | 65.7 | 73.91 |
| Zm00001d011816_P001 | Maize | plastid | 63.77 | 73.74 |
| CDX94419 | Canola | mitochondrion | 85.02 | 73.33 |
| EES04270 | Sorghum | cytosol | 63.28 | 73.18 |
| Zm00001d003672_P001 | Maize | plastid | 63.77 | 72.93 |
| Zm00001d042023_P001 | Maize | plastid | 62.8 | 72.63 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 47.83 | 72.26 |
| CDY51832 | Canola | plastid | 81.64 | 71.61 |
| CDY39734 | Canola | cytosol | 67.15 | 71.28 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 64.73 | 71.28 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 64.73 | 71.28 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 64.73 | 71.28 |
| CDY66010 | Canola | cytosol | 86.96 | 70.04 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 84.54 | 70.0 |
| CDY35037 | Canola | cytosol | 66.18 | 67.16 |
| CDY44470 | Canola | cytosol | 67.15 | 66.19 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 64.73 | 64.42 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 66.18 | 63.13 |
| Zm00001d048305_P001 | Maize | cytosol | 43.96 | 61.9 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 66.18 | 56.85 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 66.67 | 56.33 |
| GSMUA_AchrUn_... | Banana | extracellular | 63.28 | 56.22 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 67.63 | 50.72 |
| CDX67498 | Canola | extracellular | 67.63 | 29.98 |
Protein Annotations
| EnsemblPlants:CDY49476 | EnsemblPlantsGene:GSBRNA2T00093129001 | Gene3D:1.10.10.10 | InterPro:IPR036388 | InterPro:Rps10 | InterPro:S10_plectin_N |
| InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | PFAM:PF03501 | ProteinID:CDY49476 | ProteinID:CDY49476.1 |
| SEG:seg | UniParc:UPI0004EDC2E3 | UniProt:A0A078IHL0 | MapMan:17.1.3.1.11 | : | : |
Description
BnaCnng17420DBnaCnng17420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHL0]
Coordinates
chrLK032835:+:67551..69128
Molecular Weight (calculated)
22857.3 Da
IEP (calculated)
9.936
GRAVY (calculated)
-0.543
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MLIDLVPNPI YFLNIYQILE SSTNKTMIIT ETNRREICKY LFKEGVLFAK KDFNLPKHPL IESVPNLQVI KLMQSFKSKE YVRETFAWMH YYWFLTNEGI
101: EFLRTYLNLP SDVVPATLKK SAKPGGRPFG GPSGDRPRGP PRFDGDRPRY GDRDGYRGVP RGGDAGGEKG GAPADYQPSF QGSGGRPGFG RGAGGYSAAA
201: PSGSGLP
101: EFLRTYLNLP SDVVPATLKK SAKPGGRPFG GPSGDRPRGP PRFDGDRPRY GDRDGYRGVP RGGDAGGEKG GAPADYQPSF QGSGGRPGFG RGAGGYSAAA
201: PSGSGLP
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.