CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY39879

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41520.1	CDY39879	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025492.1-P	Field mustard	cytosol	82.84	94.41
CDY39734	Canola	cytosol	82.84	86.67
AT5G41520.1	Thale cress	cytosol	75.0	85.0
CDY44470	Canola	cytosol	83.33	80.95
PGSC0003DMT400075267	Potato	cytosol	65.69	74.44
KRH27894	Soybean	cytosol	65.69	74.44
KRH77585	Soybean	nucleus	65.69	74.03
KRH41234	Soybean	nucleus	65.69	74.03
Solyc12g096540.1.1	Tomato	nucleus	64.71	73.33
KRH59964	Soybean	nucleus	65.69	73.22
Solyc01g099670.2.1	Tomato	nucleus	65.2	73.08
PGSC0003DMT400063697	Potato	cytosol	65.2	73.08
CDY27840	Canola	cytosol	68.14	70.56
Os01t0962600-01	Rice	plastid	60.29	68.72
Zm00001d011816_P001	Maize	plastid	59.8	68.16
GSMUA_Achr11P...	Banana	cytosol	45.59	67.88
GSMUA_Achr2P08200_001	Banana	cytosol	45.59	67.88
Zm00001d025413_P001	Maize	extracellular, mitochondrion	58.82	67.04
CDY49476	Canola	cytosol	67.16	66.18
Os04t0430100-01	Rice	nucleus	58.82	65.57
Os02t0549600-01	Rice	cytosol	58.82	65.57
EES04270	Sorghum	cytosol	57.35	65.36
Zm00001d003672_P001	Maize	plastid	57.84	65.19
Zm00001d042023_P001	Maize	plastid	56.86	64.8
VIT_02s0025g00310.t01	Wine grape	cytosol	60.29	64.74
EES10818	Sorghum	cytosol	57.84	64.13
CDY56154	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	68.14	63.76
CDX89397	Canola	extracellular	66.18	63.38
TraesCS2D01G301300.1	Wheat	cytosol	57.84	62.77
TraesCS2A01G302600.1	Wheat	cytosol	57.35	62.23
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	57.35	62.23
CDX92731	Canola	cytosol	69.12	61.84
HORVU3Hr1G111760.2	Barley	mitochondrion	60.29	59.13
CDY51832	Canola	plastid	67.65	58.47
CDX94419	Canola	mitochondrion	66.18	56.25
CDY50187	Canola	endoplasmic reticulum, golgi	68.63	56.0
CDY66010	Canola	cytosol	68.63	54.47
HORVU0Hr1G004700.1	Barley	mitochondrion	57.84	54.38
GSMUA_AchrUn_...	Banana	extracellular	61.27	53.65
Zm00001d048305_P001	Maize	cytosol	38.24	53.06
GSMUA_Achr8P08040_001	Banana	unclear	61.76	52.28
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	61.27	51.02
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	62.25	46.01
CDX67498	Canola	extracellular	86.27	37.69

Protein Annotations

EnsemblPlants:CDY35037	EnsemblPlantsGene:GSBRNA2T00057897001	Gene3D:1.10.10.10	InterPro:IPR036388	InterPro:Rps10	InterPro:S10_plectin_N
InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	ProteinID:CDY35037	ProteinID:CDY35037.1
SEG:seg	UniParc:UPI0004EF1103	UniProt:A0A078HBA9	MapMan:17.1.3.1.11	:	:

Description

BnaC06g13490DBnaC06g13490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBA9]

Coordinates

chrLK032345:+:353887..355278

Molecular Weight (calculated)

22882.1 Da

IEP (calculated)

10.009

GRAVY (calculated)

-0.682

Length

204 amino acids

Sequence
(BLAST)

001: MVFLCSKRQW ITHFENQTTN LYSYLLQIMS EENRRAISKY LFQEGVLFAK KDFNLAQHPL VEGVPNLQVI KLMQSFKSKE YVRETFAWMH YYWFLTNEGI
101: DFLRTYLNLP SEIVPATLKK QQKPLGRPMG DRPRGPPRSD GERRSGDRDG YRGGQRSGGE FGDKSGAPAD YQPSFRGSGA GSRPGFGRGA GGYGAGPAAG
201: SDLP

Best Arabidopsis Sequence Match ( AT5G41520.1 )
(BLAST)

001: MIISETNRRE ISKYLFKEGV LFAKKDFNLP QHPLIESVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIDFLRTY LNLPSEIVPA TLKKQQKPLG
101: RPFGGGGDRP RGPPRGDGER RFGDRDGYRG GPKSGGEYGD KAGAPADYQP GFRGGAGGAR QGFGRGAGGF GGGAAGSDLP

Arabidopsis Description

RPS10B40S ribosomal protein S10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.