Factsheet for Os04t0430100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 19621931
cytosol: 19685898
plastid: 21433289
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0181300-01
Os02t0640600-00
Os02t0656300-01
Os04t0531700-01
Os04t0531750-00
Os04t0531900-01
Os04t0532100-01
Os04t0532400-01
Os04t0654700-02
Os06t0649000-01
Os06t0679100-00
Os07t0685800-01
Os09t0417600-02
Os09t0417800-01
Os11t0104866-00
Os11t0104900-00
Os12t0104766-00
Os12t0104800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25740.1	Os04t0654700-02	AT1G22920.1	21798944
AT4G25740.1	Os02t0656300-01	AT3G48150.1	21798944
AT4G25740.1	Os06t0679100-00	AT3G48150.1	21798944
AT5G41520.1	Os02t0181300-01	AT2G25000.1	21798944
AT5G41520.1	Os06t0649000-01	AT2G25000.1	21798944
AT5G41520.1	Os09t0417600-02	AT2G25000.1	21798944
AT5G41520.1	Os09t0417800-01	AT2G25000.1	21798944
AT5G41520.1	Os11t0104866-00	AT3G08530.1	21798944
AT5G41520.1	Os11t0104900-00	AT3G08530.1	21798944
AT5G41520.1	Os12t0104766-00	AT3G08530.1	21798944
AT5G41520.1	Os12t0104800-01	AT3G08530.1	21798944
AT5G52650.1	Os02t0640600-00	AT1G01800.1	21798944
AT5G52650.1	Os04t0531700-01	AT1G01800.1	21798944
AT5G52650.1	Os04t0531750-00	AT1G01800.1	21798944
AT5G52650.1	Os04t0531900-01	AT1G01800.1	21798944
AT5G52650.1	Os04t0532100-01	AT1G01800.1	21798944
AT5G52650.1	Os04t0532400-01	AT1G01800.1	21798944
AT5G52650.1	Os07t0685800-01	AT1G01800.1	21798944
AT5G52650.1	Os11t0104866-00	AT3G08530.1	21798944
AT5G52650.1	Os11t0104900-00	AT3G08530.1	21798944
AT5G52650.1	Os12t0104766-00	AT3G08530.1	21798944
AT5G52650.1	Os12t0104800-01	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0549600-01	Rice	cytosol	100.0	100.0
EES10818	Sorghum	cytosol	97.81	97.28
Zm00001d003672_P001	Maize	plastid	93.44	94.48
Zm00001d025413_P001	Maize	extracellular, mitochondrion	91.26	93.3
Os01t0962600-01	Rice	plastid	87.43	89.39
GSMUA_Achr11P...	Banana	cytosol	65.03	86.86
TraesCS2A01G302600.1	Wheat	cytosol	89.07	86.7
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	89.07	86.7
TraesCS2D01G301300.1	Wheat	cytosol	88.52	86.17
VIT_16s0050g01160.t01	Wine grape	cytosol	83.61	85.0
GSMUA_Achr2P08200_001	Banana	cytosol	63.39	84.67
Solyc01g099670.2.1	Tomato	nucleus	81.42	81.87
PGSC0003DMT400075267	Potato	cytosol	80.33	81.67
Solyc12g096540.1.1	Tomato	nucleus	80.33	81.67
PGSC0003DMT400063697	Potato	cytosol	80.87	81.32
KRH41234	Soybean	nucleus	78.69	79.56
KRH27894	Soybean	cytosol	77.6	78.89
KRH59964	Soybean	nucleus	78.69	78.69
KRH77585	Soybean	nucleus	77.6	78.45
AT4G25740.1	Thale cress	cytosol	74.86	77.4
Bra013915.1-P	Field mustard	cytosol	75.41	76.67
AT5G52650.1	Thale cress	cytosol	74.86	76.54
Bra019143.1-P	Field mustard	cytosol	75.41	76.24
Bra010448.1-P	Field mustard	cytosol	75.41	76.24
Zm00001d048305_P001	Maize	cytosol	61.2	76.19
Bra029112.1-P	Field mustard	cytosol	73.22	75.71
Bra003118.1-P	Field mustard	cytosol	72.13	73.74
HORVU0Hr1G004700.1	Barley	mitochondrion	86.89	73.27
VIT_02s0025g00310.t01	Wine grape	cytosol	72.13	69.47
CDY27840	Canola	cytosol	74.32	69.04
Bra025492.1-P	Field mustard	cytosol	66.67	68.16
AT5G41520.1	Thale cress	cytosol	66.12	67.22
CDY49476	Canola	cytosol	75.41	66.67
GSMUA_AchrUn_...	Banana	extracellular	83.06	65.24
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	86.89	64.9
CDX89397	Canola	extracellular	75.41	64.79
GSMUA_Achr8P08040_001	Banana	unclear	84.7	64.32
CDY39734	Canola	cytosol	66.67	62.56
CDY56154	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	73.22	61.47
CDX92731	Canola	cytosol	75.41	60.53
CDY44470	Canola	cytosol	67.76	59.05
CDY35037	Canola	cytosol	65.57	58.82
CDX94419	Canola	mitochondrion	75.41	57.5
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	85.79	56.88
CDY51832	Canola	plastid	73.22	56.78
CDY50187	Canola	endoplasmic reticulum, golgi	74.86	54.8
CDY66010	Canola	cytosol	74.86	53.31
CDX67498	Canola	extracellular	66.12	25.91

Protein Annotations

Gene3D:1.10.10.10	MapMan:17.1.3.1.11	EntrezGene:4329619	EntrezGene:4335865	EMBL:AB054123	EMBL:AK066564
EMBL:AK102190	ProteinID:BAD16194.1	ProteinID:BAD33256.1	ProteinID:BAF09002.1	ProteinID:BAF14730.1	ProteinID:BAS79148.1
ProteinID:BAS89251.1	ProteinID:CAD41005.1	ProteinID:EAZ23393.1	ProteinID:EAZ30777.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	InterPro:IPR036388	EnsemblPlantsGene:Os04g0430100	EnsemblPlants:Os04t0430100-01
UniProt:P0DKK8	UniProt:P0DKK9	PFAM:PF03501	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	InterPro:Rps10
InterPro:S10_plectin_N	UniParc:UPI00001B0CC0	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_015623121.1	RefSeq:XP_015636412.1	SEG:seg

Description

RPS10-2Similar to 40S ribosomal protein S10-1. (Os04t0430100-01)

Coordinates

chr4:+:21329624..21332186

Molecular Weight (calculated)

20263.9 Da

IEP (calculated)

10.198

GRAVY (calculated)

-0.878

Length

183 amino acids

Sequence
(BLAST)

001: MIIPKKNRNE ICKYLFQEGV LYAKKDYNLA KHPQIDVPNL QVIKLMQSFK SKEYVRETFS WQYYYWYLTN DGIEHLRNYL NLPSEIVPAT LKKSARPPGR
101: PFGSGPPGDR PRGPPRFEGD RPRFGDRDGY RGGPRGAPGD FGGEKGGAPA EFQPSFRSSG GRPGFGRGGG GGFGAGPTSS SME

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.