Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os04t0532400-01 | Rice | cytosol | 84.69 | 84.69 |
TraesCS2B01G388600.1 | Wheat | cytosol, plastid | 71.99 | 72.22 |
TraesCS2A01G371200.1 | Wheat | cytosol | 70.36 | 70.82 |
TraesCS7A01G114100.1 | Wheat | cytosol | 70.68 | 70.68 |
TraesCS2D01G367700.1 | Wheat | mitochondrion | 70.36 | 69.9 |
TraesCS2A01G371100.1 | Wheat | cytosol | 69.06 | 69.51 |
TraesCS2A01G371400.1 | Wheat | cytosol, plastid | 69.06 | 69.28 |
HORVU7Hr1G024270.5 | Barley | cytosol | 68.08 | 68.08 |
TraesCS2B01G388200.2 | Wheat | cytosol | 59.61 | 67.78 |
TraesCS2D01G367600.2 | Wheat | plastid | 69.06 | 67.52 |
HORVU2Hr1G091430.7 | Barley | cytosol | 67.75 | 66.45 |
TraesCS7A01G111500.1 | Wheat | cytosol | 47.88 | 66.22 |
Os04t0532100-01 | Rice | cytosol | 66.45 | 66.02 |
HORVU1Hr1G064390.1 | Barley | cytosol | 66.45 | 65.81 |
KRH40499 | Soybean | cytosol | 20.2 | 56.36 |
VIT_15s0046g03550.t01 | Wine grape | cytosol | 51.79 | 53.36 |
VIT_15s0046g03600.t01 | Wine grape | cytosol | 51.47 | 53.02 |
Bra032567.1-P | Field mustard | cytosol | 20.2 | 52.99 |
VIT_15s0046g03590.t01 | Wine grape | cytosol, peroxisome, plastid | 51.14 | 52.86 |
VIT_15s0046g03580.t01 | Wine grape | cytosol, peroxisome, plastid | 51.14 | 52.86 |
VIT_15s0046g03570.t01 | Wine grape | plastid | 50.81 | 52.53 |
VIT_15s0046g03650.t01 | Wine grape | cytosol | 50.81 | 52.35 |
Os04t0531700-01 | Rice | mitochondrion | 18.57 | 52.29 |
PGSC0003DMT400000067 | Potato | golgi, peroxisome | 49.51 | 52.23 |
PGSC0003DMT400088659 | Potato | cytosol | 19.87 | 51.69 |
KRH48198 | Soybean | cytosol | 48.21 | 51.21 |
KRH00696 | Soybean | mitochondrion | 48.86 | 51.02 |
KRH40500 | Soybean | cytosol, nucleus | 48.53 | 50.68 |
KRH48196 | Soybean | cytosol | 48.53 | 50.34 |
Solyc01g099560.2.1 | Tomato | cytosol | 28.66 | 49.72 |
VIT_06s0061g00670.t01 | Wine grape | plastid | 49.19 | 49.67 |
KRH65113 | Soybean | cytosol | 48.21 | 49.5 |
PGSC0003DMT400048179 | Potato | cytosol | 48.21 | 49.5 |
Solyc01g094210.2.1 | Tomato | cytosol | 47.88 | 49.49 |
KRH00691 | Soybean | cytosol | 40.72 | 49.02 |
KRH48194 | Soybean | cytosol | 47.56 | 48.99 |
KRH17659 | Soybean | cytosol | 15.64 | 48.98 |
KRH48202 | Soybean | cytosol | 47.56 | 48.83 |
PGSC0003DMT400048181 | Potato | cytosol | 47.56 | 48.83 |
Solyc11g071460.1.1 | Tomato | cytosol | 47.56 | 48.83 |
Bra032573.1-P | Field mustard | cytosol | 21.17 | 48.51 |
VIT_06s0061g00640.t01 | Wine grape | cytosol | 47.56 | 48.03 |
KRH48206 | Soybean | cytosol | 47.56 | 47.87 |
CDX71758 | Canola | cytosol | 45.6 | 47.3 |
KRH65114 | Soybean | cytosol | 45.28 | 47.28 |
VIT_02s0025g04510.t01 | Wine grape | cytosol | 30.62 | 47.24 |
PGSC0003DMT400047834 | Potato | cytosol | 45.93 | 47.16 |
HORVU5Hr1G031520.2 | Barley | cytosol | 43.0 | 47.14 |
Bra014448.1-P | Field mustard | cytosol | 45.6 | 47.14 |
Bra007585.1-P | Field mustard | cytosol | 45.28 | 46.96 |
CDY48937 | Canola | cytosol | 45.28 | 46.96 |
CDX89104 | Canola | cytosol | 42.02 | 46.74 |
PGSC0003DMT400026580 | Potato | cytosol | 46.91 | 46.45 |
Solyc01g094220.2.1 | Tomato | cytosol | 45.28 | 46.33 |
KRH65115 | Soybean | cytosol | 48.86 | 46.15 |
AT1G01800.1 | Thale cress | cytosol | 44.3 | 46.1 |
PGSC0003DMT400000078 | Potato | cytosol | 44.95 | 46.0 |
Solyc10g017570.2.1 | Tomato | cytosol | 46.25 | 45.81 |
Solyc01g094240.2.1 | Tomato | cytosol | 47.23 | 45.6 |
CDY56927 | Canola | endoplasmic reticulum, golgi | 45.28 | 45.42 |
Solyc01g094270.2.1 | Tomato | cytosol, plastid | 46.58 | 45.4 |
PGSC0003DMT400000080 | Potato | cytosol, mitochondrion, plastid | 44.95 | 45.1 |
Solyc01g094260.2.1 | Tomato | cytosol | 46.58 | 44.83 |
AT2G24190.2 | Thale cress | cytosol | 43.65 | 44.52 |
Solyc01g094250.2.1 | Tomato | cytosol | 45.93 | 44.2 |
Bra033230.1-P | Field mustard | cytosol | 42.02 | 43.73 |
CDX90062 | Canola | cytosol | 42.02 | 43.73 |
CDY15148 | Canola | cytosol | 42.02 | 43.73 |
AT3G61220.3 | Thale cress | endoplasmic reticulum, vacuole | 44.63 | 41.9 |
Os02t0607700-01 | Rice | cytosol, peroxisome, plastid | 39.41 | 40.6 |
PGSC0003DMT400048175 | Potato | cytosol, peroxisome, plastid | 16.61 | 40.16 |
VIT_06s0009g01450.t01 | Wine grape | plastid | 32.25 | 39.29 |
Os07t0685800-01 | Rice | plastid | 46.25 | 38.07 |
Os04t0496150-00 | Rice | cytosol | 19.22 | 37.11 |
Solyc11g042710.1.1 | Tomato | cytosol | 18.89 | 36.71 |
Os04t0496000-01 | Rice | cytosol, peroxisome | 16.94 | 36.62 |
KRH40504 | Soybean | endoplasmic reticulum | 46.25 | 36.41 |
Os01t0929500-01 | Rice | cytosol | 39.09 | 36.36 |
Os02t0640600-00 | Rice | mitochondrion | 38.11 | 31.45 |
VIT_15s0046g03530.t01 | Wine grape | cytosol | 24.1 | 21.64 |
VIT_06s0061g00620.t01 | Wine grape | mitochondrion, plastid | 49.84 | 20.59 |
Os04t0531750-00 | Rice | mitochondrion | 5.86 | 5.44 |
Protein Annotations
EMBL:AK071069 | EnsemblPlants:Os04t0531900-01 | EnsemblPlantsGene:Os04g0531900 | EntrezGene:4336494 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf |
InterPro:SDR_fam | PANTHER:PTHR43490 | PANTHER:PTHR43490:SF19 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 |
ProteinID:BAF15315.1 | ProteinID:BAS90222.1 | ProteinID:CAE03870.2 | ProteinID:CAE04562.2 | ProteinID:EEE61397.1 | RefSeq:XP_015635605.1 |
SUPFAM:SSF51735 | UniParc:UPI000021C8AD | UniProt:Q7X8W6 | MapMan:50.1.1 | : | : |
Description
Short-chain dehydrogenase/reductase SDR domain containing protein. (Os04t0531900-01)
Coordinates
chr4:-:26590627..26592402
Molecular Weight (calculated)
33374.8 Da
IEP (calculated)
5.109
GRAVY (calculated)
-0.181
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDITSLPT KRVAVVTGGN KGIGLEVCRQ LAADGITVVL TARDETRGVE AAEKLSGMGL SSVVFHQLEV TDSSSVARLA DFLKTRFGKL DILVNNAAVG
101: GMEYVQGVDT NKEQFVSMDK KQRLAWLNKQ GRETYDAAKN GVQTNYYGTK IVIQALLPLL LQSSGEGRIV NVSSDFGLLR VVNNEDLRKE LDDVDNLTEE
201: RLDEVLDSFL KDFEAGALEA HGWPTAFAAY KTAKVAMNAY TRILARRHPE LRVNCAHPGY VKTDMTIDSG FLTPEEGGRN VVTVALLPDG GPTGAFFAEG
301: KEASFLG
101: GMEYVQGVDT NKEQFVSMDK KQRLAWLNKQ GRETYDAAKN GVQTNYYGTK IVIQALLPLL LQSSGEGRIV NVSSDFGLLR VVNNEDLRKE LDDVDNLTEE
201: RLDEVLDSFL KDFEAGALEA HGWPTAFAAY KTAKVAMNAY TRILARRHPE LRVNCAHPGY VKTDMTIDSG FLTPEEGGRN VVTVALLPDG GPTGAFFAEG
301: KEASFLG
001: MADPRVAVVT GSNKGIGFEI CRQLANNGIT VVLTARDENK GLAAVQKLKT ENGFSDQAIS FHPLDVSNPD TIASLAAFVK TRFGKLDILV NNAGVGGANV
101: NVDVLKAQIA EAGAPTDISK IMSDTYEIVE ECVKTNYYGV KRMCEAMIPL LQSSDSPRIV SIASTMGKLE NVSNEWAKGV LSDAENLTEE KIDEVINEYL
201: KDYKEGALQV KGWPTVMSGY ILSKAAVIAL TRVLAKRHKS FIINSVCPGF VNTEINFNTG ILSVEEGAAS PVKLALVPNG DPSGLFFDRA NVSNF
101: NVDVLKAQIA EAGAPTDISK IMSDTYEIVE ECVKTNYYGV KRMCEAMIPL LQSSDSPRIV SIASTMGKLE NVSNEWAKGV LSDAENLTEE KIDEVINEYL
201: KDYKEGALQV KGWPTVMSGY ILSKAAVIAL TRVLAKRHKS FIINSVCPGF VNTEINFNTG ILSVEEGAAS PVKLALVPNG DPSGLFFDRA NVSNF
Arabidopsis Description
AT1G01800 protein [Source:UniProtKB/TrEMBL;Acc:Q94K30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.