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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • cytosol 4
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plastid: 27992503
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os04t0532400-01 Rice cytosol 84.69 84.69
TraesCS2B01G388600.1 Wheat cytosol, plastid 71.99 72.22
TraesCS2A01G371200.1 Wheat cytosol 70.36 70.82
TraesCS7A01G114100.1 Wheat cytosol 70.68 70.68
TraesCS2D01G367700.1 Wheat mitochondrion 70.36 69.9
TraesCS2A01G371100.1 Wheat cytosol 69.06 69.51
TraesCS2A01G371400.1 Wheat cytosol, plastid 69.06 69.28
HORVU7Hr1G024270.5 Barley cytosol 68.08 68.08
TraesCS2B01G388200.2 Wheat cytosol 59.61 67.78
TraesCS2D01G367600.2 Wheat plastid 69.06 67.52
HORVU2Hr1G091430.7 Barley cytosol 67.75 66.45
TraesCS7A01G111500.1 Wheat cytosol 47.88 66.22
Os04t0532100-01 Rice cytosol 66.45 66.02
HORVU1Hr1G064390.1 Barley cytosol 66.45 65.81
KRH40499 Soybean cytosol 20.2 56.36
VIT_15s0046g03550.t01 Wine grape cytosol 51.79 53.36
VIT_15s0046g03600.t01 Wine grape cytosol 51.47 53.02
Bra032567.1-P Field mustard cytosol 20.2 52.99
VIT_15s0046g03590.t01 Wine grape cytosol, peroxisome, plastid 51.14 52.86
VIT_15s0046g03580.t01 Wine grape cytosol, peroxisome, plastid 51.14 52.86
VIT_15s0046g03570.t01 Wine grape plastid 50.81 52.53
VIT_15s0046g03650.t01 Wine grape cytosol 50.81 52.35
Os04t0531700-01 Rice mitochondrion 18.57 52.29
PGSC0003DMT400000067 Potato golgi, peroxisome 49.51 52.23
PGSC0003DMT400088659 Potato cytosol 19.87 51.69
KRH48198 Soybean cytosol 48.21 51.21
KRH00696 Soybean mitochondrion 48.86 51.02
KRH40500 Soybean cytosol, nucleus 48.53 50.68
KRH48196 Soybean cytosol 48.53 50.34
Solyc01g099560.2.1 Tomato cytosol 28.66 49.72
VIT_06s0061g00670.t01 Wine grape plastid 49.19 49.67
KRH65113 Soybean cytosol 48.21 49.5
PGSC0003DMT400048179 Potato cytosol 48.21 49.5
Solyc01g094210.2.1 Tomato cytosol 47.88 49.49
KRH00691 Soybean cytosol 40.72 49.02
KRH48194 Soybean cytosol 47.56 48.99
KRH17659 Soybean cytosol 15.64 48.98
KRH48202 Soybean cytosol 47.56 48.83
PGSC0003DMT400048181 Potato cytosol 47.56 48.83
Solyc11g071460.1.1 Tomato cytosol 47.56 48.83
Bra032573.1-P Field mustard cytosol 21.17 48.51
VIT_06s0061g00640.t01 Wine grape cytosol 47.56 48.03
KRH48206 Soybean cytosol 47.56 47.87
CDX71758 Canola cytosol 45.6 47.3
KRH65114 Soybean cytosol 45.28 47.28
VIT_02s0025g04510.t01 Wine grape cytosol 30.62 47.24
PGSC0003DMT400047834 Potato cytosol 45.93 47.16
HORVU5Hr1G031520.2 Barley cytosol 43.0 47.14
Bra014448.1-P Field mustard cytosol 45.6 47.14
Bra007585.1-P Field mustard cytosol 45.28 46.96
CDY48937 Canola cytosol 45.28 46.96
CDX89104 Canola cytosol 42.02 46.74
PGSC0003DMT400026580 Potato cytosol 46.91 46.45
Solyc01g094220.2.1 Tomato cytosol 45.28 46.33
KRH65115 Soybean cytosol 48.86 46.15
AT1G01800.1 Thale cress cytosol 44.3 46.1
PGSC0003DMT400000078 Potato cytosol 44.95 46.0
Solyc10g017570.2.1 Tomato cytosol 46.25 45.81
Solyc01g094240.2.1 Tomato cytosol 47.23 45.6
CDY56927 Canola endoplasmic reticulum, golgi 45.28 45.42
Solyc01g094270.2.1 Tomato cytosol, plastid 46.58 45.4
PGSC0003DMT400000080 Potato cytosol, mitochondrion, plastid 44.95 45.1
Solyc01g094260.2.1 Tomato cytosol 46.58 44.83
AT2G24190.2 Thale cress cytosol 43.65 44.52
Solyc01g094250.2.1 Tomato cytosol 45.93 44.2
Bra033230.1-P Field mustard cytosol 42.02 43.73
CDX90062 Canola cytosol 42.02 43.73
CDY15148 Canola cytosol 42.02 43.73
AT3G61220.3 Thale cress endoplasmic reticulum, vacuole 44.63 41.9
Os02t0607700-01 Rice cytosol, peroxisome, plastid 39.41 40.6
PGSC0003DMT400048175 Potato cytosol, peroxisome, plastid 16.61 40.16
VIT_06s0009g01450.t01 Wine grape plastid 32.25 39.29
Os07t0685800-01 Rice plastid 46.25 38.07
Os04t0496150-00 Rice cytosol 19.22 37.11
Solyc11g042710.1.1 Tomato cytosol 18.89 36.71
Os04t0496000-01 Rice cytosol, peroxisome 16.94 36.62
KRH40504 Soybean endoplasmic reticulum 46.25 36.41
Os01t0929500-01 Rice cytosol 39.09 36.36
Os02t0640600-00 Rice mitochondrion 38.11 31.45
VIT_15s0046g03530.t01 Wine grape cytosol 24.1 21.64
VIT_06s0061g00620.t01 Wine grape mitochondrion, plastid 49.84 20.59
Os04t0531750-00 Rice mitochondrion 5.86 5.44
Protein Annotations
EMBL:AK071069EnsemblPlants:Os04t0531900-01EnsemblPlantsGene:Os04g0531900EntrezGene:4336494Gene3D:3.40.50.720InterPro:NAD(P)-bd_dom_sf
InterPro:SDR_famPANTHER:PTHR43490PANTHER:PTHR43490:SF19PFAM:PF00106PRINTS:PR00080PRINTS:PR00081
ProteinID:BAF15315.1ProteinID:BAS90222.1ProteinID:CAE03870.2ProteinID:CAE04562.2ProteinID:EEE61397.1RefSeq:XP_015635605.1
SUPFAM:SSF51735UniParc:UPI000021C8ADUniProt:Q7X8W6MapMan:50.1.1::
Description
Short-chain dehydrogenase/reductase SDR domain containing protein. (Os04t0531900-01)
Coordinates
chr4:-:26590627..26592402
Molecular Weight (calculated)
33374.8 Da
IEP (calculated)
5.109
GRAVY (calculated)
-0.181
Length
307 amino acids
Sequence
(BLAST)
001: MERDITSLPT KRVAVVTGGN KGIGLEVCRQ LAADGITVVL TARDETRGVE AAEKLSGMGL SSVVFHQLEV TDSSSVARLA DFLKTRFGKL DILVNNAAVG
101: GMEYVQGVDT NKEQFVSMDK KQRLAWLNKQ GRETYDAAKN GVQTNYYGTK IVIQALLPLL LQSSGEGRIV NVSSDFGLLR VVNNEDLRKE LDDVDNLTEE
201: RLDEVLDSFL KDFEAGALEA HGWPTAFAAY KTAKVAMNAY TRILARRHPE LRVNCAHPGY VKTDMTIDSG FLTPEEGGRN VVTVALLPDG GPTGAFFAEG
301: KEASFLG
Best Arabidopsis Sequence Match ( AT1G01800.1 )
(BLAST)
001: MADPRVAVVT GSNKGIGFEI CRQLANNGIT VVLTARDENK GLAAVQKLKT ENGFSDQAIS FHPLDVSNPD TIASLAAFVK TRFGKLDILV NNAGVGGANV
101: NVDVLKAQIA EAGAPTDISK IMSDTYEIVE ECVKTNYYGV KRMCEAMIPL LQSSDSPRIV SIASTMGKLE NVSNEWAKGV LSDAENLTEE KIDEVINEYL
201: KDYKEGALQV KGWPTVMSGY ILSKAAVIAL TRVLAKRHKS FIINSVCPGF VNTEINFNTG ILSVEEGAAS PVKLALVPNG DPSGLFFDRA NVSNF
Arabidopsis Description
AT1G01800 protein [Source:UniProtKB/TrEMBL;Acc:Q94K30]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.