Factsheet for Bra013915.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra018081.1-P
Bra024548.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25740.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G25740.1	Bra024548.1-P	AT1G22920.1	21798944
AT4G25740.1	Bra018081.1-P	AT3G48150.1	21798944
AT4G25740.1	Bra033769.1-P	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019143.1-P	Field mustard	cytosol	94.44	93.92
Bra010448.1-P	Field mustard	cytosol	93.89	93.37
AT4G25740.1	Thale cress	cytosol	90.0	91.53
Bra029112.1-P	Field mustard	cytosol	90.0	91.53
Bra003118.1-P	Field mustard	cytosol	87.22	87.71
CDX89397	Canola	extracellular	98.33	83.1
Os01t0962600-01	Rice	plastid	75.0	75.42
Bra025492.1-P	Field mustard	cytosol	75.0	75.42
Os04t0430100-01	Rice	nucleus	76.67	75.41
Os02t0549600-01	Rice	cytosol	76.67	75.41
Zm00001d025413_P001	Maize	extracellular, mitochondrion	73.89	74.3
EES10818	Sorghum	cytosol	75.56	73.91
Zm00001d011816_P001	Maize	plastid	73.33	73.74
GSMUA_Achr11P...	Banana	cytosol	56.11	73.72
Zm00001d003672_P001	Maize	plastid	73.33	72.93
Zm00001d042023_P001	Maize	plastid	71.67	72.07
GSMUA_Achr2P08200_001	Banana	cytosol	54.44	71.53
EES04270	Sorghum	cytosol	71.11	71.51
TraesCS2D01G301300.1	Wheat	cytosol	74.44	71.28
TraesCS2A01G302600.1	Wheat	cytosol	73.89	70.74
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	73.89	70.74
HORVU3Hr1G111760.2	Barley	mitochondrion	74.44	64.42
Zm00001d048305_P001	Maize	cytosol	52.22	63.95
HORVU0Hr1G004700.1	Barley	mitochondrion	75.0	62.21
GSMUA_Achr8P08040_001	Banana	unclear	75.0	56.02
GSMUA_AchrUn_...	Banana	extracellular	72.22	55.79
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	75.56	55.51
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	76.11	49.64

Protein Annotations

EnsemblPlants:Bra013915.1	EnsemblPlants:Bra013915.1-P	EnsemblPlantsGene:Bra013915	Gene3D:1.10.10.10	InterPro:IPR036388	InterPro:Rps10
InterPro:S10_plectin_N	InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	SEG:seg
UniParc:UPI0002546A12	UniProt:M4DBQ5	MapMan:17.1.3.1.11	:	:	:

Description

AT4G25740 (E=8e-049) | 40S ribosomal protein S10 (RPS10A)

Coordinates

chrA01:-:8424400..8425548

Molecular Weight (calculated)

19787.6 Da

IEP (calculated)

10.211

GRAVY (calculated)

-0.642

Length

180 amino acids

Sequence
(BLAST)

001: MIITETNRRE ICKYLFKEGV LFAKKDFNLP KHPLIESVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIEFLRNY LNLPSDVVPA TLKKSAKPIG
101: RPFGGPPGDR PRGPRFEGDR PRFSDRDGYR GGARGGDAAG EKGGAPADYQ PSFQGGGGRP GFGRGAGGYN AAAPSGSGLP

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.