Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012351.1-P | |
| Bra018081.1-P | |
| Bra024548.1-P | |
| Bra033769.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25740.1 | Bra012351.1-P | AT1G22920.1 | 21798944 |
| AT4G25740.1 | Bra024548.1-P | AT1G22920.1 | 21798944 |
| AT4G25740.1 | Bra018081.1-P | AT3G48150.1 | 21798944 |
| AT4G25740.1 | Bra033769.1-P | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019143.1-P | Field mustard | cytosol | 95.58 | 95.58 |
| Bra013915.1-P | Field mustard | cytosol | 93.37 | 93.89 |
| Bra029112.1-P | Field mustard | cytosol | 91.16 | 93.22 |
| AT4G25740.1 | Thale cress | cytosol | 91.16 | 93.22 |
| Bra003118.1-P | Field mustard | cytosol | 87.85 | 88.83 |
| Bra025492.1-P | Field mustard | cytosol | 76.8 | 77.65 |
| Os01t0962600-01 | Rice | plastid | 74.59 | 75.42 |
| Os04t0430100-01 | Rice | nucleus | 76.24 | 75.41 |
| Os02t0549600-01 | Rice | cytosol | 76.24 | 75.41 |
| GSMUA_Achr11P... | Banana | cytosol | 56.91 | 75.18 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 74.03 | 74.86 |
| EES10818 | Sorghum | cytosol | 75.14 | 73.91 |
| EES04270 | Sorghum | cytosol | 72.93 | 73.74 |
| Zm00001d011816_P001 | Maize | plastid | 72.93 | 73.74 |
| Zm00001d003672_P001 | Maize | plastid | 72.93 | 72.93 |
| Zm00001d042023_P001 | Maize | plastid | 71.82 | 72.63 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 54.7 | 72.26 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 74.03 | 71.28 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 74.03 | 71.28 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 74.03 | 71.28 |
| CDY66010 | Canola | cytosol | 99.45 | 70.04 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 74.03 | 64.42 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 74.59 | 62.21 |
| Zm00001d048305_P001 | Maize | cytosol | 50.28 | 61.9 |
| GSMUA_AchrUn_... | Banana | extracellular | 72.38 | 56.22 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 74.59 | 56.02 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 75.69 | 55.92 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 76.24 | 50.0 |
Protein Annotations
| EnsemblPlants:Bra010448.1 | EnsemblPlants:Bra010448.1-P | EnsemblPlantsGene:Bra010448 | Gene3D:1.10.10.10 | InterPro:IPR036388 | InterPro:Rps10 |
| InterPro:S10_plectin_N | InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | PFAM:PF03501 | SEG:seg |
| UniParc:UPI000254586F | UniProt:M4D1U8 | MapMan:17.1.3.1.11 | : | : | : |
Description
AT4G25740 (E=1e-048) | 40S ribosomal protein S10 (RPS10A)
Coordinates
chrA08:+:14578106..14579068
Molecular Weight (calculated)
19806.5 Da
IEP (calculated)
10.153
GRAVY (calculated)
-0.681
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MIITETNRRE ICKYLFKEGV LFAKKDFNLP KHPLIESVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIEFLRTY LNLPSDVVPA TLKKSAKPGG
101: RPFGGPSGDR PRGPPRFDGD RPRYGDRDGY RGAPRGGDAG GEKGGAPADY QPSFQGSGGR PGFGRGAGGY SAAAPSGSGL P
101: RPFGGPSGDR PRGPPRFDGD RPRYGDRDGY RGAPRGGDAG GEKGGAPADY QPSFQGSGGR PGFGRGAGGY SAAAPSGSGL P
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.