Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plastid: 22065420 plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0962600-01 | Rice | plastid | 94.97 | 94.97 |
| Zm00001d042023_P001 | Maize | plastid | 94.97 | 94.97 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 84.92 | 84.92 |
| Zm00001d003672_P001 | Maize | plastid | 84.92 | 83.98 |
| GSMUA_Achr11P... | Banana | cytosol | 64.25 | 83.94 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 63.13 | 82.48 |
| VIT_16s0050g01160.t01 | Wine grape | cytosol | 82.12 | 81.67 |
| Solyc01g099670.2.1 | Tomato | nucleus | 79.89 | 78.57 |
| PGSC0003DMT400075267 | Potato | cytosol | 78.77 | 78.33 |
| PGSC0003DMT400063697 | Potato | cytosol | 79.33 | 78.02 |
| Solyc12g096540.1.1 | Tomato | nucleus | 78.21 | 77.78 |
| AT4G25740.1 | Thale cress | cytosol | 74.86 | 75.71 |
| KRH41234 | Soybean | nucleus | 76.54 | 75.69 |
| KRH27894 | Soybean | cytosol | 75.42 | 75.0 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 87.15 | 75.0 |
| KRH59964 | Soybean | nucleus | 76.54 | 74.86 |
| KRH77585 | Soybean | nucleus | 75.42 | 74.59 |
| AT5G52650.1 | Thale cress | cytosol | 74.3 | 74.3 |
| Bra019143.1-P | Field mustard | cytosol | 74.86 | 74.03 |
| Bra013915.1-P | Field mustard | cytosol | 73.74 | 73.33 |
| Bra010448.1-P | Field mustard | cytosol | 73.74 | 72.93 |
| Bra029112.1-P | Field mustard | cytosol | 72.07 | 72.88 |
| Bra003118.1-P | Field mustard | cytosol | 71.51 | 71.51 |
| Bra025492.1-P | Field mustard | cytosol | 68.72 | 68.72 |
| Zm00001d048305_P001 | Maize | cytosol | 55.87 | 68.03 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 72.07 | 67.89 |
| AT5G41520.1 | Thale cress | cytosol | 68.16 | 67.78 |
| CDY27840 | Canola | cytosol | 73.18 | 66.5 |
| CDY49476 | Canola | cytosol | 73.74 | 63.77 |
| GSMUA_AchrUn_... | Banana | extracellular | 82.12 | 63.09 |
| CDY39734 | Canola | cytosol | 68.72 | 63.08 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 83.8 | 62.24 |
| CDX89397 | Canola | extracellular | 73.74 | 61.97 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 84.36 | 61.63 |
| CDY35037 | Canola | cytosol | 68.16 | 59.8 |
| CDY44470 | Canola | cytosol | 69.83 | 59.52 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 72.07 | 59.17 |
| CDX92731 | Canola | cytosol | 74.86 | 58.77 |
| CDX94419 | Canola | mitochondrion | 74.3 | 55.42 |
| CDY51832 | Canola | plastid | 72.07 | 54.66 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 82.68 | 53.62 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 74.3 | 53.2 |
| CDY66010 | Canola | cytosol | 73.18 | 50.97 |
| CDX67498 | Canola | extracellular | 68.72 | 26.34 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:100273505 | MapMan:17.1.3.1.11 | ProteinID:AQK98063.1 | UniProt:B4FW06 | EMBL:BT041294 |
| EMBL:BT087393 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| InterPro:IPR036388 | PFAM:PF03501 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | InterPro:Rps10 | InterPro:S10_plectin_N |
| UniParc:UPI00017B80B9 | InterPro:WH-like_DNA-bd_sf | EnsemblPlantsGene:Zm00001d011816 | EnsemblPlants:Zm00001d011816_P001 | EnsemblPlants:Zm00001d011816_T001 | SEG:seg |
Description
40S ribosomal protein S10-1
Coordinates
chr8:+:162012206..162014429
Molecular Weight (calculated)
19939.6 Da
IEP (calculated)
10.252
GRAVY (calculated)
-0.898
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MIISKKNRRE ICKYLFHEGV LYAKKDYNLA KHPKLDVPNL EVIKLMQSFK SKEYVRETFS WQYYYWYLTN DGIEHLRSFL NLPSEVVPNT LKKSSKPPSR
101: PFGSGPPGDR PRGPPRYEGD RPRFGDRDGY RGGPRGAPGD FGGDKGGAPA DFQPSFRGSR PGFGRGGGGA FGAGGSSME
101: PFGSGPPGDR PRGPPRYEGD RPRFGDRDGY RGGPRGAPGD FGGDKGGAPA DFQPSFRGSR PGFGRGGGGA FGAGGSSME
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.