Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G25740.1 | Thale cress | cytosol | 91.06 | 92.09 |
| Bra029112.1-P | Field mustard | cytosol | 89.94 | 90.96 |
| Bra003118.1-P | Field mustard | cytosol | 88.27 | 88.27 |
| CDY27840 | Canola | cytosol | 91.62 | 83.25 |
| Os01t0962600-01 | Rice | plastid | 75.42 | 75.42 |
| AT5G41520.1 | Thale cress | cytosol | 75.42 | 75.0 |
| Os04t0430100-01 | Rice | nucleus | 76.54 | 74.86 |
| Os02t0549600-01 | Rice | cytosol | 76.54 | 74.86 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 90.5 | 74.31 |
| Zm00001d011816_P001 | Maize | plastid | 74.3 | 74.3 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 74.3 | 74.3 |
| EES10818 | Sorghum | cytosol | 75.42 | 73.37 |
| Zm00001d003672_P001 | Maize | plastid | 73.18 | 72.38 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 55.31 | 72.26 |
| GSMUA_Achr11P... | Banana | cytosol | 55.31 | 72.26 |
| Zm00001d042023_P001 | Maize | plastid | 72.07 | 72.07 |
| EES04270 | Sorghum | cytosol | 72.07 | 72.07 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 74.86 | 71.28 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 74.86 | 71.28 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 74.86 | 71.28 |
| CDY51832 | Canola | plastid | 90.5 | 68.64 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 73.74 | 63.46 |
| Zm00001d048305_P001 | Maize | cytosol | 51.96 | 63.27 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 75.42 | 62.21 |
| GSMUA_AchrUn_... | Banana | extracellular | 73.18 | 56.22 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 75.98 | 55.51 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 74.3 | 55.19 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 75.42 | 48.91 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | EntrezGene:835342 | UniProt:A0A178UA34 | ProteinID:AED96245.1 | ArrayExpress:AT5G52650 |
| EnsemblPlantsGene:AT5G52650 | RefSeq:AT5G52650 | TAIR:AT5G52650 | RefSeq:AT5G52650-TAIR-G | EnsemblPlants:AT5G52650.1 | TAIR:AT5G52650.1 |
| EMBL:AY065217 | EMBL:AY088678 | EMBL:AY122932 | ProteinID:BAA98083.1 | GO:GO:0000028 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0022626 |
| GO:GO:0022627 | GO:GO:0030312 | GO:GO:0030529 | GO:GO:0042788 | InterPro:IPR036388 | RefSeq:NP_200077.1 |
| ProteinID:OAO90505.1 | PFAM:PF03501 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | UniProt:Q9LTF2 | InterPro:Rps10 |
| InterPro:S10_plectin_N | UniParc:UPI00000A5B4D | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : |
Description
RPS10C40S ribosomal protein S10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTF2]
Coordinates
chr5:-:21355541..21357219
Molecular Weight (calculated)
19552.2 Da
IEP (calculated)
10.085
GRAVY (calculated)
-0.633
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MIISEANRKE ICKYLFKEGV CFAKKDFNLA KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRS RGPRHEGGDR PRFGDRDGYR AGPRAGGEFG GEKGGAPADY QPSFQGSGRG FGRGAGGYSA AAPSGSGLP
101: PFGGPPGDRS RGPRHEGGDR PRFGDRDGYR AGPRAGGEFG GEKGGAPADY QPSFQGSGRG FGRGAGGYSA AAPSGSGLP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.