Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019143.1-P | Field mustard | cytosol | 93.79 | 91.71 |
| Bra010448.1-P | Field mustard | cytosol | 93.22 | 91.16 |
| AT5G52650.1 | Thale cress | cytosol | 92.09 | 91.06 |
| Bra013915.1-P | Field mustard | cytosol | 91.53 | 90.0 |
| CDY49476 | Canola | cytosol | 93.22 | 79.71 |
| AT5G41520.1 | Thale cress | cytosol | 77.97 | 76.67 |
| CDX89397 | Canola | extracellular | 92.09 | 76.53 |
| Os01t0962600-01 | Rice | plastid | 76.84 | 75.98 |
| Os04t0430100-01 | Rice | nucleus | 77.4 | 74.86 |
| Os02t0549600-01 | Rice | cytosol | 77.4 | 74.86 |
| Zm00001d011816_P001 | Maize | plastid | 75.71 | 74.86 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 75.71 | 74.86 |
| GSMUA_Achr11P... | Banana | cytosol | 57.63 | 74.45 |
| EES10818 | Sorghum | cytosol | 76.27 | 73.37 |
| Zm00001d042023_P001 | Maize | plastid | 74.01 | 73.18 |
| EES04270 | Sorghum | cytosol | 74.01 | 73.18 |
| CDX92731 | Canola | cytosol | 93.79 | 72.81 |
| Zm00001d003672_P001 | Maize | plastid | 74.01 | 72.38 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 55.93 | 72.26 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 75.71 | 71.28 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 75.14 | 70.74 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 75.14 | 70.74 |
| CDX94419 | Canola | mitochondrion | 92.09 | 67.92 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 93.22 | 66.0 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 75.14 | 63.94 |
| CDY66010 | Canola | cytosol | 92.66 | 63.81 |
| Zm00001d048305_P001 | Maize | cytosol | 52.54 | 63.27 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 76.27 | 62.21 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 77.4 | 56.85 |
| GSMUA_AchrUn_... | Banana | extracellular | 74.58 | 56.65 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 77.97 | 56.33 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 78.53 | 50.36 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | EntrezGene:828679 | ProteinID:AEE85107.1 | ArrayExpress:AT4G25740 | EnsemblPlantsGene:AT4G25740 |
| RefSeq:AT4G25740 | TAIR:AT4G25740 | RefSeq:AT4G25740-TAIR-G | EnsemblPlants:AT4G25740.1 | TAIR:AT4G25740.1 | EMBL:AY035172 |
| EMBL:AY113926 | ProteinID:CAB39595.1 | ProteinID:CAB81384.1 | GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0022626 | GO:GO:0022627 | GO:GO:0030529 |
| InterPro:IPR036388 | RefSeq:NP_194304.1 | PFAM:PF03501 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | UniProt:Q9SW09 |
| InterPro:Rps10 | InterPro:S10_plectin_N | UniParc:UPI00000017C9 | InterPro:WH-like_DNA-bd_sf | SEG:seg | : |
Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
Coordinates
chr4:-:13107136..13108827
Molecular Weight (calculated)
19448.1 Da
IEP (calculated)
10.163
GRAVY (calculated)
-0.727
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.