Factsheet for Bra019143.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra018081.1-P
Bra024548.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25740.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G25740.1	Bra024548.1-P	AT1G22920.1	21798944
AT4G25740.1	Bra018081.1-P	AT3G48150.1	21798944
AT4G25740.1	Bra033769.1-P	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010448.1-P	Field mustard	cytosol	95.58	95.58
Bra029112.1-P	Field mustard	cytosol	92.82	94.92
Bra013915.1-P	Field mustard	cytosol	93.92	94.44
AT4G25740.1	Thale cress	cytosol	91.71	93.79
Bra003118.1-P	Field mustard	cytosol	88.4	89.39
CDX92731	Canola	cytosol	100.0	79.39
Bra025492.1-P	Field mustard	cytosol	76.8	77.65
Os01t0962600-01	Rice	plastid	75.69	76.54
Zm00001d025413_P001	Maize	extracellular, mitochondrion	74.59	75.42
Os04t0430100-01	Rice	nucleus	76.24	75.41
Os02t0549600-01	Rice	cytosol	76.24	75.41
Zm00001d011816_P001	Maize	plastid	74.03	74.86
GSMUA_Achr11P...	Banana	cytosol	56.35	74.45
EES10818	Sorghum	cytosol	75.14	73.91
EES04270	Sorghum	cytosol	72.93	73.74
Zm00001d042023_P001	Maize	plastid	72.93	73.74
Zm00001d003672_P001	Maize	plastid	72.93	72.93
TraesCS2D01G301300.1	Wheat	cytosol	75.69	72.87
TraesCS2A01G302600.1	Wheat	cytosol	75.14	72.34
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	75.14	72.34
GSMUA_Achr2P08200_001	Banana	cytosol	54.7	72.26
CDY50187	Canola	endoplasmic reticulum, golgi	99.45	72.0
HORVU3Hr1G111760.2	Barley	mitochondrion	75.69	65.87
HORVU0Hr1G004700.1	Barley	mitochondrion	76.24	63.59
Zm00001d048305_P001	Maize	cytosol	50.83	62.59
GSMUA_Achr8P08040_001	Banana	unclear	75.14	56.43
GSMUA_AchrUn_...	Banana	extracellular	72.38	56.22
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	75.69	55.92
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	75.69	49.64

Protein Annotations

EnsemblPlants:Bra019143.1	EnsemblPlants:Bra019143.1-P	EnsemblPlantsGene:Bra019143	Gene3D:1.10.10.10	InterPro:IPR036388	InterPro:Rps10
InterPro:S10_plectin_N	InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	SEG:seg
UniParc:UPI0001BA82D9	UniProt:M4DRK0	MapMan:17.1.3.1.11	:	:	:

Description

AT4G25740 (E=6e-049) | 40S ribosomal protein S10 (RPS10A)

Coordinates

chrA03:-:26083436..26084427

Molecular Weight (calculated)

19857.7 Da

IEP (calculated)

10.211

GRAVY (calculated)

-0.644

Length

181 amino acids

Sequence
(BLAST)

001: MIISETNRRE ICKYLFKEGV LFAKKDFNLP KHPLIESVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIEFLRTY LNLPSDVVPA TLKKSAKPIG
101: RPFGGPPGDR PRGPPRFDGD RPRYGDRDGY RGGQRGGDVG GEKGGAPADY QPSFQGGGGR PGFGRGAGGF SAAAPSGSGL P

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.