Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
- plastid 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| unclear:
20177697
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 50.62 | 89.05 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 49.38 | 86.86 |
| VIT_16s0050g01160.t01 | Wine grape | cytosol | 63.49 | 85.0 |
| Os02t0549600-01 | Rice | cytosol | 64.32 | 84.7 |
| Os04t0430100-01 | Rice | nucleus | 64.32 | 84.7 |
| Os01t0962600-01 | Rice | plastid | 62.66 | 84.36 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 62.24 | 83.8 |
| Zm00001d011816_P001 | Maize | plastid | 62.24 | 83.8 |
| Zm00001d003672_P001 | Maize | plastid | 62.66 | 83.43 |
| EES10818 | Sorghum | cytosol | 63.49 | 83.15 |
| EES04270 | Sorghum | cytosol | 61.41 | 82.68 |
| Solyc12g096540.1.1 | Tomato | nucleus | 59.75 | 80.0 |
| KRH27894 | Soybean | cytosol | 59.75 | 80.0 |
| PGSC0003DMT400075267 | Potato | cytosol | 59.75 | 80.0 |
| Zm00001d042023_P001 | Maize | plastid | 59.34 | 79.89 |
| Solyc01g099670.2.1 | Tomato | nucleus | 60.17 | 79.67 |
| KRH77585 | Soybean | nucleus | 59.75 | 79.56 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 61.83 | 79.26 |
| PGSC0003DMT400063697 | Potato | cytosol | 59.75 | 79.12 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 61.41 | 78.72 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 61.41 | 78.72 |
| KRH41234 | Soybean | nucleus | 58.92 | 78.45 |
| KRH59964 | Soybean | nucleus | 58.92 | 77.6 |
| AT4G25740.1 | Thale cress | cytosol | 56.85 | 77.4 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 77.59 | 76.33 |
| Bra019143.1-P | Field mustard | cytosol | 56.43 | 75.14 |
| Bra013915.1-P | Field mustard | cytosol | 56.02 | 75.0 |
| Bra010448.1-P | Field mustard | cytosol | 56.02 | 74.59 |
| AT5G52650.1 | Thale cress | cytosol | 55.19 | 74.3 |
| Bra029112.1-P | Field mustard | cytosol | 54.36 | 74.01 |
| Bra003118.1-P | Field mustard | cytosol | 54.77 | 73.74 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 62.66 | 72.6 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 56.85 | 72.11 |
| GSMUA_AchrUn_... | Banana | extracellular | 69.71 | 72.1 |
| Bra025492.1-P | Field mustard | cytosol | 51.87 | 69.83 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 62.66 | 69.59 |
| AT5G41520.1 | Thale cress | cytosol | 51.45 | 68.89 |
| CDY27840 | Canola | cytosol | 56.02 | 68.53 |
| Zm00001d048305_P001 | Maize | cytosol | 41.08 | 67.35 |
| CDY49476 | Canola | cytosol | 56.85 | 66.18 |
| CDX89397 | Canola | extracellular | 56.85 | 64.32 |
| CDY39734 | Canola | cytosol | 51.87 | 64.1 |
| CDY35037 | Canola | cytosol | 52.28 | 61.76 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 70.54 | 61.59 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 55.19 | 61.01 |
| CDX92731 | Canola | cytosol | 57.68 | 60.96 |
| CDY44470 | Canola | cytosol | 52.28 | 60.0 |
| CDX94419 | Canola | mitochondrion | 57.26 | 57.5 |
| CDY51832 | Canola | plastid | 56.02 | 57.2 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 56.85 | 54.8 |
| CDY66010 | Canola | cytosol | 56.02 | 52.53 |
| GSMUA_Achr8P32790_001 | Banana | mitochondrion | 31.12 | 35.55 |
| CDX67498 | Canola | extracellular | 52.7 | 27.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P08040_001 | EnsemblPlants:GSMUA_Achr8T08040_001 | EnsemblPlantsGene:GSMUA_Achr8G08040_001 | Gene3D:1.10.10.10 | InterPro:IPR036388 | InterPro:Rps10 |
| InterPro:S10_plectin_N | InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | PFAM:PF03501 | SEG:seg |
| UniParc:UPI000295B508 | UniProt:M0TNK7 | MapMan:17.1.3.1.11 | : | : | : |
Description
40S ribosomal protein S10 [Source:GMGC_GENE;Acc:GSMUA_Achr8G08040_001]
Coordinates
chr8:+:5419376..5423835
Molecular Weight (calculated)
26807.0 Da
IEP (calculated)
10.055
GRAVY (calculated)
-0.581
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQAESKYWG ALVMPISSPS ATAITNHTAR VLLATCLISS AHCTSFSRLQ RLPFLREEAM IIPKKNRHEI CKYLFQEGVL YAKKDYNLAK HPEIDVPNLQ
101: VIKLMQSFKS REYVRETFAW QHYYWYLTND GIEYLRTFLN LPSEIVPATL KKSVRPPTRP FGSGPPGDRP RGPPRFEGDR PRFGDRDGYR GGPRAGPPGD
201: IGDKSGAPPE FQPSFRGGGS RPGFGRGGGG YGQGAPSASF E
101: VIKLMQSFKS REYVRETFAW QHYYWYLTND GIEYLRTFLN LPSEIVPATL KKSVRPPTRP FGSGPPGDRP RGPPRFEGDR PRFGDRDGYR GGPRAGPPGD
201: IGDKSGAPPE FQPSFRGGGS RPGFGRGGGG YGQGAPSASF E
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.