Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY39879 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G41520.1 | CDY39879 | AT2G25000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025492.1-P | Field mustard | cytosol | 89.74 | 97.77 |
| AT5G41520.1 | Thale cress | cytosol | 80.0 | 86.67 |
| CDY44470 | Canola | cytosol | 90.77 | 84.29 |
| CDY35037 | Canola | cytosol | 86.67 | 82.84 |
| KRH27894 | Soybean | cytosol | 69.74 | 75.56 |
| KRH77585 | Soybean | nucleus | 69.74 | 75.14 |
| KRH41234 | Soybean | nucleus | 69.74 | 75.14 |
| PGSC0003DMT400075267 | Potato | cytosol | 69.23 | 75.0 |
| KRH59964 | Soybean | nucleus | 69.74 | 74.32 |
| Solyc12g096540.1.1 | Tomato | nucleus | 68.21 | 73.89 |
| Solyc01g099670.2.1 | Tomato | nucleus | 68.72 | 73.63 |
| PGSC0003DMT400063697 | Potato | cytosol | 68.21 | 73.08 |
| CDY27840 | Canola | cytosol | 72.31 | 71.57 |
| Zm00001d011816_P001 | Maize | plastid | 63.08 | 68.72 |
| Os01t0962600-01 | Rice | plastid | 63.08 | 68.72 |
| GSMUA_Achr11P... | Banana | cytosol | 48.21 | 68.61 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 48.21 | 68.61 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 62.56 | 68.16 |
| CDY49476 | Canola | cytosol | 71.28 | 67.15 |
| EES04270 | Sorghum | cytosol | 61.54 | 67.04 |
| Os02t0549600-01 | Rice | cytosol | 62.56 | 66.67 |
| Os04t0430100-01 | Rice | nucleus | 62.56 | 66.67 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 64.62 | 66.32 |
| Zm00001d003672_P001 | Maize | plastid | 61.54 | 66.3 |
| Zm00001d042023_P001 | Maize | plastid | 60.0 | 65.36 |
| EES10818 | Sorghum | cytosol | 61.54 | 65.22 |
| CDX89397 | Canola | extracellular | 69.23 | 63.38 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 70.26 | 62.84 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 60.51 | 62.77 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 60.51 | 62.77 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 60.51 | 62.77 |
| CDX92731 | Canola | cytosol | 71.28 | 60.96 |
| CDY51832 | Canola | plastid | 70.26 | 58.05 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 61.54 | 57.69 |
| CDX94419 | Canola | mitochondrion | 69.74 | 56.67 |
| CDY66010 | Canola | cytosol | 72.82 | 55.25 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 70.77 | 55.2 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 61.03 | 54.84 |
| Zm00001d048305_P001 | Maize | cytosol | 40.51 | 53.74 |
| GSMUA_AchrUn_... | Banana | extracellular | 64.1 | 53.65 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 64.1 | 51.87 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 64.1 | 51.02 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 65.13 | 46.01 |
| CDX67498 | Canola | extracellular | 85.64 | 35.76 |
Protein Annotations
| EnsemblPlants:CDY39734 | EnsemblPlantsGene:GSBRNA2T00068520001 | Gene3D:1.10.10.10 | InterPro:IPR036388 | InterPro:Rps10 | InterPro:S10_plectin_N |
| InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | PFAM:PF03501 | ProteinID:CDY39734 | ProteinID:CDY39734.1 |
| SEG:seg | UniParc:UPI0004EE5BCC | UniProt:A0A078HQY4 | MapMan:17.1.3.1.11 | : | : |
Description
BnaA04g11190DBnaA04g11190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQY4]
Coordinates
chrLK032456:+:121789..123472
Molecular Weight (calculated)
21780.9 Da
IEP (calculated)
9.954
GRAVY (calculated)
-0.633
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSFQMLIN LHSYLFQIMS EENRRAISKY LFQEGVLFAK KDFNLPQHPL IEGVPNLQVI KLMQSFKSKE YVRETFAWMH YYWFLTNEGI DFLRTYLNLP
101: SEIVPATLKK QQKPLGRPMG DRPRGPPRSD GERRFGGDRD GYRGAPRAGG EFGDKSGAPA DYQPSFRAPG AGSRPGFGRG AGGYGAGPAA GSDLP
101: SEIVPATLKK QQKPLGRPMG DRPRGPPRSD GERRFGGDRD GYRGAPRAGG EFGDKSGAPA DYQPSFRAPG AGSRPGFGRG AGGYGAGPAA GSDLP
001: MIISETNRRE ISKYLFKEGV LFAKKDFNLP QHPLIESVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIDFLRTY LNLPSEIVPA TLKKQQKPLG
101: RPFGGGGDRP RGPPRGDGER RFGDRDGYRG GPKSGGEYGD KAGAPADYQP GFRGGAGGAR QGFGRGAGGF GGGAAGSDLP
101: RPFGGGGDRP RGPPRGDGER RFGDRDGYRG GPKSGGEYGD KAGAPADYQP GFRGGAGGAR QGFGRGAGGF GGGAAGSDLP
Arabidopsis Description
RPS10B40S ribosomal protein S10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.