Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025492.1-P | Field mustard | cytosol | 87.78 | 88.27 |
| CDY39734 | Canola | cytosol | 86.67 | 80.0 |
| AT4G25740.1 | Thale cress | cytosol | 76.67 | 77.97 |
| PGSC0003DMT400075267 | Potato | cytosol | 76.67 | 76.67 |
| Solyc12g096540.1.1 | Tomato | nucleus | 76.11 | 76.11 |
| KRH27894 | Soybean | cytosol | 76.11 | 76.11 |
| KRH77585 | Soybean | nucleus | 76.11 | 75.69 |
| AT5G52650.1 | Thale cress | cytosol | 75.0 | 75.42 |
| Solyc01g099670.2.1 | Tomato | nucleus | 76.11 | 75.27 |
| KRH41234 | Soybean | nucleus | 75.56 | 75.14 |
| CDY35037 | Canola | cytosol | 85.0 | 75.0 |
| PGSC0003DMT400063697 | Potato | cytosol | 75.56 | 74.73 |
| KRH59964 | Soybean | nucleus | 75.56 | 74.32 |
| CDY44470 | Canola | cytosol | 86.11 | 73.81 |
| Os01t0962600-01 | Rice | plastid | 68.89 | 69.27 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 67.78 | 68.16 |
| Zm00001d011816_P001 | Maize | plastid | 67.78 | 68.16 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 51.11 | 67.15 |
| GSMUA_Achr11P... | Banana | cytosol | 51.11 | 67.15 |
| Zm00001d003672_P001 | Maize | plastid | 67.22 | 66.85 |
| Os04t0430100-01 | Rice | nucleus | 67.22 | 66.12 |
| Os02t0549600-01 | Rice | cytosol | 67.22 | 66.12 |
| EES04270 | Sorghum | cytosol | 65.56 | 65.92 |
| EES10818 | Sorghum | cytosol | 67.22 | 65.76 |
| Zm00001d042023_P001 | Maize | plastid | 64.44 | 64.8 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 67.78 | 64.21 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 65.56 | 62.77 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 65.56 | 62.77 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 65.56 | 62.77 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 68.33 | 59.13 |
| Zm00001d048305_P001 | Maize | cytosol | 47.22 | 57.82 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 66.11 | 54.84 |
| GSMUA_AchrUn_... | Banana | extracellular | 70.56 | 54.51 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 68.89 | 51.45 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 68.89 | 50.61 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 70.0 | 45.65 |
| CDX67498 | Canola | extracellular | 85.0 | 32.76 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | EntrezGene:834154 | UniProt:A0A178UD67 | ProteinID:AED94687.1 | ProteinID:AED94688.1 |
| EMBL:AF375440 | ArrayExpress:AT5G41520 | EnsemblPlantsGene:AT5G41520 | RefSeq:AT5G41520 | TAIR:AT5G41520 | RefSeq:AT5G41520-TAIR-G |
| EnsemblPlants:AT5G41520.1 | TAIR:AT5G41520.1 | EMBL:AY037240 | EMBL:AY060539 | ProteinID:BAB11458.1 | GO:GO:0000028 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010252 | GO:GO:0016043 | GO:GO:0022626 | GO:GO:0022627 |
| GO:GO:0030312 | GO:GO:0030529 | GO:GO:0042788 | GO:GO:0090506 | GO:GO:2000032 | InterPro:IPR036388 |
| RefSeq:NP_001078688.1 | RefSeq:NP_198967.1 | ProteinID:OAO91184.1 | PFAM:PF03501 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 |
| UniProt:Q9FFS8 | InterPro:Rps10 | InterPro:S10_plectin_N | UniParc:UPI0000000E57 | InterPro:WH-like_DNA-bd_sf | SEG:seg |
Description
RPS10B40S ribosomal protein S10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS8]
Coordinates
chr5:-:16609021..16610692
Molecular Weight (calculated)
19734.4 Da
IEP (calculated)
10.209
GRAVY (calculated)
-0.697
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MIISETNRRE ISKYLFKEGV LFAKKDFNLP QHPLIESVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIDFLRTY LNLPSEIVPA TLKKQQKPLG
101: RPFGGGGDRP RGPPRGDGER RFGDRDGYRG GPKSGGEYGD KAGAPADYQP GFRGGAGGAR QGFGRGAGGF GGGAAGSDLP
101: RPFGGGGDRP RGPPRGDGER RFGDRDGYRG GPKSGGEYGD KAGAPADYQP GFRGGAGGAR QGFGRGAGGF GGGAAGSDLP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.