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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400075267 Potato cytosol 98.33 98.33
Solyc01g099670.2.1 Tomato nucleus 95.56 94.51
VIT_16s0050g01160.t01 Wine grape cytosol 91.11 91.11
KRH27894 Soybean cytosol 83.89 83.89
KRH41234 Soybean nucleus 83.89 83.43
KRH77585 Soybean nucleus 83.89 83.43
KRH59964 Soybean nucleus 83.89 82.51
Os01t0962600-01 Rice plastid 80.56 81.01
Os02t0549600-01 Rice cytosol 81.67 80.33
Os04t0430100-01 Rice nucleus 81.67 80.33
Zm00001d025413_P001 Maize extracellular, mitochondrion 79.44 79.89
GSMUA_Achr11P... Banana cytosol 60.56 79.56
Zm00001d003672_P001 Maize plastid 78.89 78.45
EES10818 Sorghum cytosol 80.0 78.26
Zm00001d011816_P001 Maize plastid 77.78 78.21
GSMUA_Achr2P08200_001 Banana cytosol 59.44 78.1
EES04270 Sorghum cytosol 76.67 77.09
Zm00001d042023_P001 Maize plastid 76.11 76.54
AT5G41520.1 Thale cress cytosol 76.11 76.11
TraesCS2D01G301300.1 Wheat cytosol 78.89 75.53
TraesCS2A01G302600.1 Wheat cytosol 78.33 75.0
TraesCS2B01G318500.1 Wheat cytosol, golgi, unclear 78.33 75.0
Bra025492.1-P Field mustard cytosol 74.44 74.86
HORVU3Hr1G111760.2 Barley mitochondrion 80.56 69.71
CDY39734 Canola cytosol 73.89 68.21
HORVU0Hr1G004700.1 Barley mitochondrion 80.0 66.36
Zm00001d048305_P001 Maize cytosol 53.89 65.99
CDY35037 Canola cytosol 73.33 64.71
CDY44470 Canola cytosol 74.44 63.81
GSMUA_AchrUn_... Banana extracellular 80.56 62.23
GSMUA_Achr3P22420_001 Banana endoplasmic reticulum, golgi, plasma membrane 81.67 60.0
GSMUA_Achr8P08040_001 Banana unclear 80.0 59.75
GSMUA_Achr1P16990_001 Banana cytosol, endoplasmic reticulum, nucleus 82.78 53.99
CDX67498 Canola extracellular 74.44 28.69
Protein Annotations
Gene3D:1.10.10.10MapMan:17.1.3.1.11GO:GO:0000028GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0008150GO:GO:0009987GO:GO:0016043
GO:GO:0022627InterPro:IPR036388UniProt:K4DHC7PFAM:PF03501PANTHER:PTHR12146PANTHER:PTHR12146:SF7
InterPro:Rps10InterPro:S10_plectin_NEnsemblPlantsGene:Solyc12g096540.1EnsemblPlants:Solyc12g096540.1.1UniParc:UPI0002769D43InterPro:WH-like_DNA-bd_sf
SEG:seg:::::
Description
No Description!
Coordinates
chr12:-:65415193..65417543
Molecular Weight (calculated)
19853.6 Da
IEP (calculated)
10.254
GRAVY (calculated)
-0.779
Length
180 amino acids
Sequence
(BLAST)
001: MIIPEKNRRE ISKYLFQEGV CFAKKDYNLA KHPNIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWYLTN DGIEFLRTYL NLPSEIVPAT LKKSAKPLGR
101: PMGGPPGDRP RGPPRFEGDR PRFGDRDGYR AGPRGPPGEF GGEKGGAPAD YQPAFRGGGG RPGFGRGAGG FGGAPPSSSS
Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.