Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
plastid: 26371478 unclear: 26455813 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400075267 | Potato | cytosol | 98.33 | 98.33 |
Solyc01g099670.2.1 | Tomato | nucleus | 95.56 | 94.51 |
VIT_16s0050g01160.t01 | Wine grape | cytosol | 91.11 | 91.11 |
KRH27894 | Soybean | cytosol | 83.89 | 83.89 |
KRH41234 | Soybean | nucleus | 83.89 | 83.43 |
KRH77585 | Soybean | nucleus | 83.89 | 83.43 |
KRH59964 | Soybean | nucleus | 83.89 | 82.51 |
Os01t0962600-01 | Rice | plastid | 80.56 | 81.01 |
Os02t0549600-01 | Rice | cytosol | 81.67 | 80.33 |
Os04t0430100-01 | Rice | nucleus | 81.67 | 80.33 |
Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 79.44 | 79.89 |
GSMUA_Achr11P... | Banana | cytosol | 60.56 | 79.56 |
Zm00001d003672_P001 | Maize | plastid | 78.89 | 78.45 |
EES10818 | Sorghum | cytosol | 80.0 | 78.26 |
Zm00001d011816_P001 | Maize | plastid | 77.78 | 78.21 |
GSMUA_Achr2P08200_001 | Banana | cytosol | 59.44 | 78.1 |
EES04270 | Sorghum | cytosol | 76.67 | 77.09 |
Zm00001d042023_P001 | Maize | plastid | 76.11 | 76.54 |
AT5G41520.1 | Thale cress | cytosol | 76.11 | 76.11 |
TraesCS2D01G301300.1 | Wheat | cytosol | 78.89 | 75.53 |
TraesCS2A01G302600.1 | Wheat | cytosol | 78.33 | 75.0 |
TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 78.33 | 75.0 |
Bra025492.1-P | Field mustard | cytosol | 74.44 | 74.86 |
HORVU3Hr1G111760.2 | Barley | mitochondrion | 80.56 | 69.71 |
CDY39734 | Canola | cytosol | 73.89 | 68.21 |
HORVU0Hr1G004700.1 | Barley | mitochondrion | 80.0 | 66.36 |
Zm00001d048305_P001 | Maize | cytosol | 53.89 | 65.99 |
CDY35037 | Canola | cytosol | 73.33 | 64.71 |
CDY44470 | Canola | cytosol | 74.44 | 63.81 |
GSMUA_AchrUn_... | Banana | extracellular | 80.56 | 62.23 |
GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 81.67 | 60.0 |
GSMUA_Achr8P08040_001 | Banana | unclear | 80.0 | 59.75 |
GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 82.78 | 53.99 |
CDX67498 | Canola | extracellular | 74.44 | 28.69 |
Protein Annotations
Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
GO:GO:0022627 | InterPro:IPR036388 | UniProt:K4DHC7 | PFAM:PF03501 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 |
InterPro:Rps10 | InterPro:S10_plectin_N | EnsemblPlantsGene:Solyc12g096540.1 | EnsemblPlants:Solyc12g096540.1.1 | UniParc:UPI0002769D43 | InterPro:WH-like_DNA-bd_sf |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:65415193..65417543
Molecular Weight (calculated)
19853.6 Da
IEP (calculated)
10.254
GRAVY (calculated)
-0.779
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIPEKNRRE ISKYLFQEGV CFAKKDYNLA KHPNIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWYLTN DGIEFLRTYL NLPSEIVPAT LKKSAKPLGR
101: PMGGPPGDRP RGPPRFEGDR PRFGDRDGYR AGPRGPPGEF GGEKGGAPAD YQPAFRGGGG RPGFGRGAGG FGGAPPSSSS
101: PMGGPPGDRP RGPPRFEGDR PRFGDRDGYR AGPRGPPGEF GGEKGGAPAD YQPAFRGGGG RPGFGRGAGG FGGAPPSSSS
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.