Factsheet for Solyc08g067340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067900.2.1
Solyc03g116890.2.1
Solyc06g009750.2.1
Solyc06g068460.2.1
Solyc06g073150.2.1
Solyc07g005780.1.1
Solyc07g005810.2.1
Solyc08g067340.2.1
Solyc08g067360.2.1
Solyc11g017300.1.1
Solyc12g009960.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25000.1	Solyc03g116890.2.1	AT1G80840.1	16603654
AT2G25000.1	Solyc06g068460.2.1	AT1G80840.1	16603654
AT2G25000.1	Solyc08g067340.2.1	AT2G25000.1	16603654
AT2G25000.1	Solyc08g067360.2.1	AT2G25000.1	16603654
AT2G25000.1	Solyc08g067340.2.1	AT2G25000.1	21798944
AT2G25000.1	Solyc08g067360.2.1	AT2G25000.1	21798944
AT2G25000.1	Solyc02g067900.2.1	AT3G27420.1	21798944
AT2G25000.1	Solyc06g009750.2.1	AT4G02150.1	21798944
AT2G25000.1	Solyc08g067340.2.1	AT4G31800.1	16603654
AT2G25000.1	Solyc08g067360.2.1	AT4G31800.1	16603654
AT2G25000.1	Solyc08g067340.2.1	AT4G31800.1	21798944
AT2G25000.1	Solyc08g067360.2.1	AT4G31800.1	21798944
AT2G25000.1	Solyc07g005780.1.1	AT5G57870.1	21798944
AT2G25000.1	Solyc07g005810.2.1	AT5G57870.1	21798944
AT2G25000.1	Solyc12g009960.1.1	AT5G57870.1	21798944
AT4G31800.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT4G31800.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT4G31800.1	Solyc03g116890.2.1	AT1G80840.1	16603654
AT4G31800.1	Solyc06g068460.2.1	AT1G80840.1	16603654
AT4G31800.1	Solyc03g116890.2.1	AT1G80840.1	18776063
AT4G31800.1	Solyc06g068460.2.1	AT1G80840.1	18776063
AT4G31800.1	Solyc03g116890.2.1	AT1G80840.1	21798944
AT4G31800.1	Solyc06g068460.2.1	AT1G80840.1	21798944
AT4G31800.1	Solyc08g067340.2.1	AT2G25000.1	16603654
AT4G31800.1	Solyc08g067360.2.1	AT2G25000.1	16603654
AT4G31800.1	Solyc08g067340.2.1	AT4G31800.1	16603654
AT4G31800.1	Solyc08g067360.2.1	AT4G31800.1	16603654
AT4G31800.1	Solyc08g067340.2.1	AT4G31800.1	21798944
AT4G31800.1	Solyc08g067360.2.1	AT4G31800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019061	Potato	nucleus	94.47	94.47
Solyc08g067360.2.1	Tomato	nucleus	74.31	72.87
GSMUA_Achr7P19340_001	Banana	nucleus	36.36	47.92
Bra019123.1-P	Field mustard	nucleus	34.39	44.85
GSMUA_Achr2P05100_001	Banana	nucleus	33.6	44.74
Solyc12g042590.1.1	Tomato	nucleus	37.15	43.52
CDX72327	Canola	nucleus	47.43	42.11
KRH61669	Soybean	nucleus	36.36	41.82
GSMUA_Achr3P13440_001	Banana	nucleus	45.45	41.82
GSMUA_Achr5P16460_001	Banana	nucleus	38.34	41.28
GSMUA_Achr10P...	Banana	nucleus	37.55	40.95
VIT_04s0008g05760.t01	Wine grape	nucleus	50.99	40.69
CDX75196	Canola	nucleus	45.45	40.64
GSMUA_Achr11P...	Banana	nucleus	39.13	40.41
AT2G25000.1	Thale cress	nucleus	42.69	39.85
HORVU5Hr1G065380.2	Barley	nucleus	27.27	39.66
KRH15674	Soybean	nucleus	43.87	39.36
GSMUA_Achr7P05200_001	Banana	nucleus	43.48	39.29
GSMUA_Achr7P16090_001	Banana	endoplasmic reticulum, nucleus, plastid	33.6	38.12
AT4G31800.1	Thale cress	nucleus	46.25	37.74
Bra011299.1-P	Field mustard	nucleus	46.64	37.22
CDX68787	Canola	nucleus	46.25	36.68
CDY39879	Canola	nucleus	44.27	36.48
Bra010220.1-P	Field mustard	nucleus	43.87	36.04
KRH05350	Soybean	nucleus	44.27	35.9
Solyc03g116890.2.1	Tomato	nucleus	48.62	35.14
GSMUA_Achr10P...	Banana	nucleus	39.53	34.72
CDY70096	Canola	nucleus	46.64	34.2
Bra023983.1-P	Field mustard	nucleus	46.64	34.2
GSMUA_Achr4P01930_001	Banana	extracellular, golgi	37.94	33.22
Solyc06g068460.2.1	Tomato	nucleus	47.04	33.06
Zm00001d053746_P001	Maize	nucleus	41.9	33.02
KRH52329	Soybean	nucleus	39.92	32.69
Zm00001d015515_P001	Maize	nucleus	44.66	32.56
TraesCS7D01G497400.1	Wheat	nucleus	41.9	32.42
TraesCS7A01G508800.1	Wheat	nucleus	41.5	32.11
TraesCS7B01G418400.1	Wheat	nucleus	41.11	31.9
Os02t0181300-01	Rice	nucleus	43.87	31.9
Os06t0649000-01	Rice	nucleus	42.29	31.75
TraesCS5D01G232700.1	Wheat	nucleus	33.99	31.73
HORVU6Hr1G028790.1	Barley	nucleus	44.27	31.73
TraesCS6A01G146900.1	Wheat	nucleus	43.87	31.71
GSMUA_Achr1P10080_001	Banana	nucleus	41.9	31.64
TraesCS7B01G418500.2	Wheat	nucleus	41.11	31.61
TraesCS6D01G136200.1	Wheat	nucleus	43.48	31.61
TraesCS5A01G225500.1	Wheat	nucleus	33.6	31.37
TraesCS7D01G497800.1	Wheat	nucleus	40.32	31.29
TraesCS6B01G175100.2	Wheat	nucleus	43.87	31.27
TraesCS7B01G419400.1	Wheat	nucleus	39.53	31.06
EES04642	Sorghum	nucleus	44.66	31.04
TraesCS7A01G508700.1	Wheat	nucleus	39.53	30.86
HORVU7Hr1G113830.1	Barley	nucleus	38.74	30.72
Os09t0417600-02	Rice	nucleus	39.53	30.58
TraesCS7D01G497700.1	Wheat	nucleus	39.53	30.49
Zm00001d020492_P001	Maize	nucleus	36.36	30.46
TraesCS7B01G418600.1	Wheat	nucleus	33.99	29.76
EER90124	Sorghum	nucleus	39.53	29.24
Zm00001d036726_P001	Maize	nucleus	39.53	29.07
TraesCS7A01G509000.1	Wheat	nucleus	39.92	29.02
Zm00001d020495_P001	Maize	nucleus	30.43	28.95
Zm00001d046805_P001	Maize	nucleus	39.92	28.77
EER88729	Sorghum	nucleus	39.53	28.74
TraesCS5B01G224000.1	Wheat	nucleus	37.55	28.7
EER98905	Sorghum	nucleus, plastid	36.76	28.44
TraesCS5D01G232800.1	Wheat	nucleus	37.15	28.4
KXG35639	Sorghum	nucleus	32.81	28.14
TraesCS7D01G497300.1	Wheat	plastid	41.11	27.96
TraesCS5A01G225600.1	Wheat	nucleus	35.97	27.49
TraesCS5B01G224100.1	Wheat	nucleus	35.57	27.27
Os09t0417800-01	Rice	nucleus	33.6	26.73
HORVU7Hr1G113850.4	Barley	nucleus, plastid	41.11	25.62
TraesCS5D01G232900.1	Wheat	nucleus	36.76	25.07
Zm00001d005749_P001	Maize	nucleus	33.99	24.5
HORVU5Hr1G065420.15	Barley	nucleus	37.15	24.04
Solyc02g032950.2.1	Tomato	nucleus	30.43	15.46
Solyc01g104550.2.1	Tomato	nucleus	28.85	15.37
Solyc05g007110.2.1	Tomato	nucleus	23.72	15.31
Solyc02g067430.2.1	Tomato	nucleus	26.48	15.23
Solyc02g080890.2.1	Tomato	nucleus	30.43	14.0
Solyc03g113120.2.1	Tomato	nucleus	26.88	12.98
Solyc07g051840.2.1	Tomato	nucleus	31.23	12.52
Solyc06g070990.2.1	Tomato	nucleus	24.9	9.71

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4CLW0	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF3	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc08g067340.2
EnsemblPlants:Solyc08g067340.2.1	UniParc:UPI000276C27C	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	:	:

Description

No Description!

Coordinates

chr8:+:56393456..56395758

Molecular Weight (calculated)

28832.1 Da

IEP (calculated)

8.814

GRAVY (calculated)

-0.704

Length

253 amino acids

Sequence
(BLAST)

001: MGNKSFFIDL NTNPLLHNIN RSPIPRETLD EELSRMREEN KKLATTLTSL YEKYNSLQTH IIELQQKYSN HEEDNSKLLL SRKRKAEEDY CVNNSYINFE
101: EASPKMPREI TTNISTVCVK TNPSDQTSVV KDGYNWRKYG QKVTRDNPSP RAYFKCSFAP SCPVKKKVQR SVKDASILVA TYEGEHNHPQ PPQAEITVPL
201: VNTTDPTFLN KFMKDINTNS VQQQYLVEQM ASSLSKNPSF AATVATAISG LLF

Best Arabidopsis Sequence Match ( AT1G80840.1 )
(BLAST)

001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK

Arabidopsis Description

WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.