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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003588.1-P
Bra008435.1-P
Bra010220.1-P
Bra011299.1-P
Bra019123.1-P
Bra023983.1-P
Bra035148.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G31800.1 Bra003588.1-P AT1G80840.1 16603654
AT4G31800.1 Bra008435.1-P AT1G80840.1 16603654
AT4G31800.1 Bra035148.1-P AT1G80840.1 16603654
AT4G31800.1 Bra003588.1-P AT1G80840.1 18776063
AT4G31800.1 Bra008435.1-P AT1G80840.1 18776063
AT4G31800.1 Bra035148.1-P AT1G80840.1 18776063
AT4G31800.1 Bra003588.1-P AT1G80840.1 21798944
AT4G31800.1 Bra008435.1-P AT1G80840.1 21798944
AT4G31800.1 Bra035148.1-P AT1G80840.1 21798944
AT4G31800.1 Bra010220.1-P AT2G25000.1 16603654
AT4G31800.1 Bra011299.1-P AT4G31800.1 16603654
AT4G31800.1 Bra019123.1-P AT4G31800.1 16603654
AT4G31800.1 Bra023983.1-P AT4G31800.1 16603654
AT4G31800.1 Bra011299.1-P AT4G31800.1 21798944
AT4G31800.1 Bra019123.1-P AT4G31800.1 21798944
AT4G31800.1 Bra023983.1-P AT4G31800.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70096 Canola nucleus 99.13 99.13
Bra019123.1-P Field mustard nucleus 44.64 79.38
Bra010220.1-P Field mustard nucleus 67.54 75.65
Bra011299.1-P Field mustard nucleus 69.28 75.39
AT4G31800.1 Thale cress nucleus 66.38 73.87
GSMUA_Achr7P19340_001 Banana nucleus 29.57 53.12
GSMUA_Achr2P05100_001 Banana nucleus 26.38 47.89
PGSC0003DMT400019058 Potato nucleus 36.23 47.89
PGSC0003DMT400019061 Potato nucleus 34.2 46.64
Solyc08g067340.2.1 Tomato nucleus 34.2 46.64
Solyc08g067360.2.1 Tomato nucleus 34.49 46.12
GSMUA_Achr5P16460_001 Banana nucleus 31.01 45.53
KRH61669 Soybean nucleus 28.99 45.45
GSMUA_Achr10P... Banana nucleus 30.43 45.26
VIT_04s0008g05760.t01 Wine grape nucleus 41.16 44.8
KRH15674 Soybean nucleus 36.52 44.68
GSMUA_Achr7P05200_001 Banana nucleus 34.78 42.86
GSMUA_Achr11P... Banana nucleus 30.14 42.45
GSMUA_Achr3P13440_001 Banana nucleus 33.62 42.18
Bra003588.1-P Field mustard nucleus 36.23 42.09
Bra008435.1-P Field mustard nucleus 35.36 42.07
Bra035148.1-P Field mustard nucleus 35.36 40.67
HORVU5Hr1G065380.2 Barley nucleus 20.29 40.23
GSMUA_Achr10P... Banana nucleus 33.04 39.58
KRH05350 Soybean nucleus 35.65 39.42
GSMUA_Achr7P16090_001 Banana endoplasmic reticulum, nucleus, plastid 24.93 38.56
GSMUA_Achr4P01930_001 Banana extracellular, golgi 30.72 36.68
KRH52329 Soybean nucleus 31.88 35.6
Os02t0181300-01 Rice nucleus 34.78 34.48
GSMUA_Achr1P10080_001 Banana nucleus 33.04 34.03
TraesCS6A01G146900.1 Wheat nucleus 34.2 33.71
Zm00001d053746_P001 Maize nucleus 31.3 33.64
TraesCS6D01G136200.1 Wheat nucleus 33.91 33.62
TraesCS7B01G418400.1 Wheat nucleus 31.59 33.44
TraesCS7A01G508700.1 Wheat nucleus 31.3 33.33
TraesCS7D01G497400.1 Wheat nucleus 31.59 33.33
TraesCS5B01G224000.1 Wheat nucleus 31.88 33.23
TraesCS7D01G497700.1 Wheat nucleus 31.59 33.23
TraesCS7B01G419400.1 Wheat nucleus 31.01 33.23
HORVU7Hr1G113830.1 Barley nucleus 30.72 33.23
TraesCS7B01G418500.2 Wheat nucleus 31.59 33.13
TraesCS7D01G497800.1 Wheat nucleus 31.3 33.13
TraesCS5D01G232800.1 Wheat nucleus 31.59 32.93
Zm00001d020492_P001 Maize nucleus 28.7 32.78
HORVU6Hr1G028790.1 Barley nucleus 33.33 32.58
Zm00001d015515_P001 Maize nucleus 32.75 32.56
TraesCS7A01G508800.1 Wheat nucleus 30.72 32.42
Os06t0649000-01 Rice nucleus 31.59 32.34
EES04642 Sorghum nucleus 33.91 32.14
Os09t0417600-02 Rice nucleus 30.43 32.11
TraesCS5D01G232700.1 Wheat nucleus 25.22 32.1
TraesCS5A01G225600.1 Wheat nucleus 30.72 32.02
TraesCS6B01G175100.2 Wheat nucleus 32.75 31.83
TraesCS5A01G225500.1 Wheat nucleus 24.93 31.73
EER98905 Sorghum nucleus, plastid 29.86 31.5
TraesCS7B01G418600.1 Wheat nucleus 26.38 31.49
Zm00001d046805_P001 Maize nucleus 31.88 31.34
TraesCS7A01G509000.1 Wheat nucleus 31.59 31.32
EER90124 Sorghum nucleus 31.01 31.29
TraesCS5B01G224100.1 Wheat nucleus 29.86 31.21
EER88729 Sorghum nucleus 31.01 30.75
Zm00001d036726_P001 Maize nucleus 30.43 30.52
Zm00001d020495_P001 Maize nucleus 23.48 30.45
KXG35639 Sorghum nucleus 25.8 30.17
TraesCS7D01G497300.1 Wheat plastid 31.88 29.57
Os09t0417800-01 Rice nucleus 26.38 28.62
TraesCS5D01G232900.1 Wheat nucleus 30.72 28.57
Zm00001d005749_P001 Maize nucleus 27.54 27.07
HORVU7Hr1G113850.4 Barley nucleus, plastid 31.59 26.85
HORVU5Hr1G065420.15 Barley nucleus 30.14 26.6
Bra025693.1-P Field mustard nucleus 16.81 20.21
Bra029491.1-P Field mustard nucleus 25.22 17.68
Bra004285.1-P Field mustard nucleus 16.81 17.68
Bra027057.1-P Field mustard nucleus 27.83 17.39
Bra036315.1-P Field mustard nucleus 24.35 17.14
Bra007884.1-P Field mustard nucleus 18.55 16.71
Bra023505.1-P Field mustard nucleus 24.35 16.28
Bra006283.1-P Field mustard nucleus 24.64 16.13
Bra000793.1-P Field mustard nucleus 23.77 15.8
Bra013584.1-P Field mustard nucleus 24.64 15.8
Bra031053.1-P Field mustard nucleus 21.45 15.74
Bra016535.1-P Field mustard nucleus 21.45 15.61
Bra008719.1-P Field mustard nucleus 24.64 15.43
Bra034482.1-P Field mustard nucleus 22.03 14.99
Bra040505.1-P Field mustard nucleus 22.9 14.77
Bra016263.1-P Field mustard nucleus 18.26 8.42
Bra025692.1-P Field mustard nucleus 4.06 5.81
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80EnsemblPlantsGene:Bra023983EnsemblPlants:Bra023983.1EnsemblPlants:Bra023983.1-Pncoils:Coil
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565InterPro:IPR003657
InterPro:IPR036576UniProt:M4E5C9PFAM:PF03106PFscan:PS50811PANTHER:PTHR31429PANTHER:PTHR31429:SF32
SMART:SM00774SUPFAM:SSF118290UniParc:UPI0002540F81InterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg
Description
AT2G25000 (E=3e-076) WRKY60, ATWRKY60 | WRKY60; transcription factor
Coordinates
chrA03:+:28444561..28447035
Molecular Weight (calculated)
38489.8 Da
IEP (calculated)
4.366
GRAVY (calculated)
-0.893
Length
345 amino acids
Sequence
(BLAST)
001: MDCSSFLDLN TNPFDHNFPA KLPKEEVKVS TSSDLERKQN ASELREELNR VNSENKKLTE MLAAVWENYY ALHHHLEKLQ SRKSPEMDQI EQPTKRRKQD
101: SYELLGFGNG LSGGKTENSS SNEDHHQLLS CKRPVTDSFN KANVSTVYVP SDSSDTSLTV KDGYQWRKYG QKVTRDNPSP RAYFRCSFAP SCPVKKKVQR
201: SAEDPSILVA TYEGTHNHLG PNGSEGDVTS QVGSSTVTLD LVHSGQGTMQ EVLVQQMASS LTKDSKFTAA LAAAISGSGE EPPLKEEQIN EVEEPEQEID
301: DILLIDPHNH EYEDLTDDAT DEAVEDEFNE NDDISSDDEN VDVSD
Best Arabidopsis Sequence Match ( AT4G31800.1 )
(BLAST)
001: MDGSSFLDIS LDLNTNPFSA KLPKKEVSVL ASTHLKRKWL EQDESASELR EELNRVNSEN KKLTEMLARV CESYNELHNH LEKLQSRQSP EIEQTDIPIK
101: KRKQDPDEFL GFPIGLSSGK TENSSSNEDH HHHHQQHEQK NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLTVKDGFQ WRKYGQKVTR DNPSPRAYFR
201: CSFAPSCPVK KKVQRSAEDP SLLVATYEGT HNHLGPNASE GDATSQGGSS TVTLDLVNGC HRLALEKNER DNTMQEVLIQ QMASSLTKDS KFTAALAAAI
301: SGRLMEQSRT
Arabidopsis Description
WRKY18WRKY like transcription factor [Source:UniProtKB/TrEMBL;Acc:Q0WTZ3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.