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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002421.1-P
Bra003588.1-P
Bra008435.1-P
Bra010220.1-P
Bra011299.1-P
Bra019123.1-P
Bra020196.1-P
Bra020197.1-P
Bra023983.1-P
Bra035148.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G80840.1 Bra003588.1-P AT1G80840.1 16603654
AT1G80840.1 Bra008435.1-P AT1G80840.1 16603654
AT1G80840.1 Bra035148.1-P AT1G80840.1 16603654
AT1G80840.1 Bra010220.1-P AT2G25000.1 16603654
AT1G80840.1 Bra011299.1-P AT4G31800.1 16603654
AT1G80840.1 Bra019123.1-P AT4G31800.1 16603654
AT1G80840.1 Bra023983.1-P AT4G31800.1 16603654
AT1G80840.1 Bra011299.1-P AT4G31800.1 18776063
AT1G80840.1 Bra019123.1-P AT4G31800.1 18776063
AT1G80840.1 Bra023983.1-P AT4G31800.1 18776063
AT1G80840.1 Bra011299.1-P AT4G31800.1 21798944
AT1G80840.1 Bra019123.1-P AT4G31800.1 21798944
AT1G80840.1 Bra023983.1-P AT4G31800.1 21798944
AT1G80840.1 Bra002421.1-P AT5G22570.1 21798944
AT1G80840.1 Bra020196.1-P AT5G22570.1 21798944
AT1G80840.1 Bra020197.1-P AT5G22570.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67971 Canola nucleus 99.66 99.66
Bra008435.1-P Field mustard nucleus 86.2 88.28
Bra035148.1-P Field mustard nucleus 88.22 87.33
AT1G80840.1 Thale cress nucleus 87.88 86.42
GSMUA_Achr7P19340_001 Banana nucleus 36.36 56.25
KRH23643 Soybean nucleus 56.57 54.37
VIT_09s0018g00240.t01 Wine grape nucleus 55.89 53.38
KRH47344 Soybean nucleus 55.22 52.73
KRH44560 Soybean nucleus 55.56 52.72
KRH09652 Soybean nucleus 55.56 50.0
Bra019123.1-P Field mustard nucleus 31.99 48.97
GSMUA_Achr2P05100_001 Banana nucleus 29.97 46.84
GSMUA_Achr5P16460_001 Banana nucleus 36.7 46.38
GSMUA_Achr11P... Banana nucleus 37.37 45.31
GSMUA_Achr10P... Banana nucleus 35.35 45.26
Solyc03g116890.2.1 Tomato nucleus 52.19 44.29
PGSC0003DMT400051047 Potato nucleus 51.85 43.38
HORVU5Hr1G065380.2 Barley nucleus 25.25 43.1
Solyc06g068460.2.1 Tomato nucleus 50.84 41.94
PGSC0003DMT400073396 Potato nucleus 50.51 41.67
GSMUA_Achr3P13440_001 Banana nucleus 38.38 41.45
Bra010220.1-P Field mustard nucleus 42.42 40.91
GSMUA_Achr7P05200_001 Banana nucleus 38.38 40.71
GSMUA_Achr4P01930_001 Banana extracellular, golgi 38.38 39.45
Bra011299.1-P Field mustard nucleus 42.09 39.43
GSMUA_Achr7P16090_001 Banana endoplasmic reticulum, nucleus, plastid 28.96 38.56
GSMUA_Achr10P... Banana nucleus 37.04 38.19
Zm00001d020492_P001 Maize nucleus 37.71 37.09
GSMUA_Achr1P10080_001 Banana nucleus 41.75 37.01
TraesCS7D01G497400.1 Wheat nucleus 40.74 37.0
TraesCS7B01G419400.1 Wheat nucleus 39.73 36.65
TraesCS7B01G418400.1 Wheat nucleus 40.07 36.5
TraesCS7B01G418500.2 Wheat nucleus 40.4 36.47
TraesCS7A01G508700.1 Wheat nucleus 39.73 36.42
Bra023983.1-P Field mustard nucleus 42.09 36.23
TraesCS7D01G497800.1 Wheat nucleus 39.73 36.2
TraesCS7A01G508800.1 Wheat nucleus 39.73 36.09
Os09t0417600-02 Rice nucleus 39.39 35.78
HORVU7Hr1G113830.1 Barley nucleus 38.38 35.74
TraesCS5D01G232800.1 Wheat nucleus 39.73 35.65
TraesCS7D01G497700.1 Wheat nucleus 39.06 35.37
TraesCS7B01G418600.1 Wheat nucleus 34.34 35.29
Zm00001d053746_P001 Maize nucleus 37.71 34.89
Os02t0181300-01 Rice nucleus 40.74 34.77
TraesCS5B01G224000.1 Wheat nucleus 38.72 34.74
TraesCS5B01G224100.1 Wheat nucleus 38.38 34.55
Os06t0649000-01 Rice nucleus 39.06 34.42
TraesCS7A01G509000.1 Wheat nucleus 40.07 34.2
TraesCS5A01G225600.1 Wheat nucleus 38.05 34.14
TraesCS5D01G232700.1 Wheat nucleus 30.98 33.95
EER98905 Sorghum nucleus, plastid 37.37 33.95
EER90124 Sorghum nucleus 38.38 33.33
Zm00001d046805_P001 Maize nucleus 39.39 33.33
Zm00001d036726_P001 Maize nucleus 38.38 33.14
TraesCS6A01G146900.1 Wheat nucleus 38.72 32.86
TraesCS6D01G136200.1 Wheat nucleus 38.38 32.76
Zm00001d015515_P001 Maize nucleus 38.05 32.56
TraesCS5A01G225500.1 Wheat nucleus 29.63 32.47
EER88729 Sorghum nucleus 38.05 32.47
EES04642 Sorghum nucleus 39.73 32.42
Zm00001d020495_P001 Maize nucleus 28.96 32.33
HORVU6Hr1G028790.1 Barley nucleus 38.05 32.01
TraesCS6B01G175100.2 Wheat nucleus 38.05 31.83
TraesCS7D01G497300.1 Wheat plastid 39.73 31.72
KXG35639 Sorghum nucleus 30.64 30.85
TraesCS5D01G232900.1 Wheat nucleus 38.05 30.46
Zm00001d005749_P001 Maize nucleus 35.02 29.63
HORVU5Hr1G065420.15 Barley nucleus 38.05 28.9
HORVU7Hr1G113850.4 Barley nucleus, plastid 39.39 28.82
Os09t0417800-01 Rice nucleus 29.29 27.36
Bra025693.1-P Field mustard nucleus 17.51 18.12
Bra007884.1-P Field mustard nucleus 22.9 17.75
Bra029491.1-P Field mustard nucleus 29.29 17.68
Bra000793.1-P Field mustard nucleus 29.63 16.96
Bra004285.1-P Field mustard nucleus 18.52 16.77
Bra013584.1-P Field mustard nucleus 29.97 16.54
Bra036315.1-P Field mustard nucleus 26.26 15.92
Bra027057.1-P Field mustard nucleus 28.96 15.58
Bra031053.1-P Field mustard nucleus 24.24 15.32
Bra023505.1-P Field mustard nucleus 26.26 15.12
Bra016535.1-P Field mustard nucleus 23.57 14.77
Bra006283.1-P Field mustard nucleus 25.93 14.61
Bra008719.1-P Field mustard nucleus 26.26 14.16
Bra034482.1-P Field mustard nucleus 23.91 14.0
Bra040505.1-P Field mustard nucleus 23.91 13.27
Bra016263.1-P Field mustard nucleus 21.21 8.42
Bra025692.1-P Field mustard nucleus 6.06 7.47
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80EnsemblPlantsGene:Bra003588EnsemblPlants:Bra003588.1EnsemblPlants:Bra003588.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565InterPro:IPR003657InterPro:IPR036576
UniProt:M4CHA5PFAM:PF03106PFscan:PS50811PANTHER:PTHR31429PANTHER:PTHR31429:SF3SMART:SM00774
SUPFAM:SSF118290UniParc:UPI0002541364InterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg:
Description
AT1G80840 (E=6e-135) WRKY40, ATWRKY40 | WRKY40; transcription factor
Coordinates
chrA07:+:13951932..13953469
Molecular Weight (calculated)
32931.7 Da
IEP (calculated)
9.049
GRAVY (calculated)
-0.751
Length
297 amino acids
Sequence
(BLAST)
001: MDQSSSSSFV DTSLDLTIGV TRMRVKEDST TSALVDELNR VSAENKKLSE MLTLMCENYN VLRKQLMEYV NKSNNMTERD QTSPPKKRKS PARDDAVSSA
101: VIGGVSESSS TDQDGQYLCK KKQREETVVK ENVSRVYYKT EASDTTLVVK DGYQWRKYGQ KVTRDNPSPR AYFKCACAPS CSVKKKVQRS VEDQSVLVAT
201: YEGEHNHPMP SKIDSNNGLN RYISLGGHTA PAKGSSSLAE PVTESKKVTS PSRMDIPEVQ KLLVEQMASS LTKDPNFTAA LAAAVTGRLY QQNQTEK
Best Arabidopsis Sequence Match ( AT1G80840.1 )
(BLAST)
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.