Factsheet for PGSC0003DMT400051047

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019058
PGSC0003DMT400019061
PGSC0003DMT400051047
PGSC0003DMT400073396

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80840.1	PGSC0003DMT400051047	AT1G80840.1	16603654
AT1G80840.1	PGSC0003DMT400073396	AT1G80840.1	16603654
AT1G80840.1	PGSC0003DMT400019058	AT2G25000.1	16603654
AT1G80840.1	PGSC0003DMT400019061	AT2G25000.1	16603654
AT1G80840.1	PGSC0003DMT400019058	AT4G31800.1	16603654
AT1G80840.1	PGSC0003DMT400019061	AT4G31800.1	16603654
AT1G80840.1	PGSC0003DMT400019058	AT4G31800.1	18776063
AT1G80840.1	PGSC0003DMT400019061	AT4G31800.1	18776063
AT1G80840.1	PGSC0003DMT400019058	AT4G31800.1	21798944
AT1G80840.1	PGSC0003DMT400019061	AT4G31800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g116890.2.1	Tomato	nucleus	87.89	89.14
VIT_09s0018g00240.t01	Wine grape	nucleus	52.96	60.45
KRH23643	Soybean	nucleus	52.39	60.19
PGSC0003DMT400073396	Potato	nucleus	57.18	56.39
KRH47344	Soybean	nucleus	49.3	56.27
GSMUA_Achr7P19340_001	Banana	nucleus	30.42	56.25
PGSC0003DMT400073710	Potato	nucleus	34.08	55.76
KRH44560	Soybean	nucleus	49.01	55.59
Bra008435.1-P	Field mustard	nucleus	45.07	55.17
KRH09652	Soybean	nucleus	50.99	54.85
CDY22299	Canola	nucleus	44.79	54.83
CDY67287	Canola	nucleus	44.79	54.83
AT1G80840.1	Thale cress	nucleus	45.63	53.64
CDX88573	Canola	nucleus	44.51	52.49
Bra003588.1-P	Field mustard	nucleus	43.38	51.85
Bra035148.1-P	Field mustard	nucleus	43.66	51.67
CDX87347	Canola	nucleus	43.66	51.67
CDX67971	Canola	nucleus	43.1	51.52
PGSC0003DMT400019061	Potato	nucleus	36.06	50.59
CDX79347	Canola	nucleus	42.25	50.34
GSMUA_Achr10P...	Banana	nucleus	32.11	49.14
GSMUA_Achr2P05100_001	Banana	nucleus	26.2	48.95
PGSC0003DMT400019058	Potato	nucleus	35.77	48.66
GSMUA_Achr5P16460_001	Banana	nucleus	30.99	46.81
GSMUA_Achr11P...	Banana	nucleus	32.11	46.53
GSMUA_Achr3P13440_001	Banana	nucleus	34.08	44.0
GSMUA_Achr7P05200_001	Banana	nucleus	34.65	43.93
GSMUA_Achr10P...	Banana	nucleus	34.37	42.36
HORVU5Hr1G065380.2	Barley	nucleus	20.56	41.95
GSMUA_Achr7P16090_001	Banana	endoplasmic reticulum, nucleus, plastid	25.35	40.36
GSMUA_Achr1P10080_001	Banana	nucleus	35.77	37.91
GSMUA_Achr4P01930_001	Banana	extracellular, golgi	30.7	37.72
Zm00001d053746_P001	Maize	nucleus	33.24	36.76
Zm00001d020492_P001	Maize	nucleus	30.99	36.42
Os09t0417600-02	Rice	nucleus	32.68	35.47
Os02t0181300-01	Rice	nucleus	34.65	35.34
TraesCS7B01G418500.2	Wheat	nucleus	32.39	34.95
TraesCS5B01G224000.1	Wheat	nucleus	32.39	34.74
TraesCS7D01G497400.1	Wheat	nucleus	31.83	34.56
EER98905	Sorghum	nucleus, plastid	31.83	34.56
TraesCS5D01G232800.1	Wheat	nucleus	32.11	34.44
Os06t0649000-01	Rice	nucleus	32.68	34.42
TraesCS6A01G146900.1	Wheat	nucleus	33.52	34.0
TraesCS7A01G508800.1	Wheat	nucleus	31.27	33.95
TraesCS6D01G136200.1	Wheat	nucleus	33.24	33.91
Zm00001d046805_P001	Maize	nucleus	33.52	33.9
EES04642	Sorghum	nucleus	34.65	33.79
Zm00001d036726_P001	Maize	nucleus	32.68	33.72
HORVU6Hr1G028790.1	Barley	nucleus	33.52	33.71
TraesCS6B01G175100.2	Wheat	nucleus	33.24	33.24
TraesCS7B01G419400.1	Wheat	nucleus	30.14	33.23
TraesCS5D01G232700.1	Wheat	nucleus	25.35	33.21
TraesCS7D01G497800.1	Wheat	nucleus	30.42	33.13
TraesCS7B01G418400.1	Wheat	nucleus	30.42	33.13
EER90124	Sorghum	nucleus	31.83	33.04
TraesCS7A01G508700.1	Wheat	nucleus	30.14	33.02
TraesCS5A01G225600.1	Wheat	nucleus	30.7	32.93
HORVU7Hr1G113830.1	Barley	nucleus	29.58	32.92
TraesCS5A01G225500.1	Wheat	nucleus	25.07	32.84
TraesCS5B01G224100.1	Wheat	nucleus	30.42	32.73
Zm00001d015515_P001	Maize	nucleus	31.83	32.56
Zm00001d020495_P001	Maize	nucleus	24.23	32.33
TraesCS7D01G497700.1	Wheat	nucleus	29.86	32.32
EER88729	Sorghum	nucleus	31.27	31.9
TraesCS7B01G418600.1	Wheat	nucleus	25.35	31.14
TraesCS7A01G509000.1	Wheat	nucleus	29.86	30.46
KXG35639	Sorghum	nucleus	25.07	30.17
TraesCS5D01G232900.1	Wheat	nucleus	30.99	29.65
Zm00001d005749_P001	Maize	nucleus	29.01	29.34
HORVU5Hr1G065420.15	Barley	nucleus	32.11	29.16
TraesCS7D01G497300.1	Wheat	plastid	30.42	29.03
Os09t0417800-01	Rice	nucleus	25.35	28.3
HORVU7Hr1G113850.4	Barley	nucleus, plastid	31.27	27.34
PGSC0003DMT400056725	Potato	nucleus	27.61	19.76
PGSC0003DMT400076591	Potato	nucleus	21.69	18.64
PGSC0003DMT400038852	Potato	nucleus	27.61	17.59
PGSC0003DMT400042400	Potato	nucleus	27.32	17.54
PGSC0003DMT400017859	Potato	nucleus	20.85	16.7
PGSC0003DMT400046570	Potato	nucleus	22.82	15.43

Protein Annotations

EntrezGene:102590949	MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1BR79
PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400019824	PGSC:PGSC0003DMG400019824	EnsemblPlants:PGSC0003DMT400051047	PFscan:PS50811	PANTHER:PTHR31429
PANTHER:PTHR31429:SF3	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002957278	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_006341684.1	SEG:seg	:	:	:	:

Description

JA-induced WRKY protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019824]

Coordinates

chr3:-:56677004..56680104

Molecular Weight (calculated)

39759.2 Da

IEP (calculated)

8.992

GRAVY (calculated)

-0.970

Length

355 amino acids

Sequence
(BLAST)

001: MEFTSLVDTS LDLNFRPLRV SDELPKQEVE SNFIGLGRDP VLPIKDETGN LMEELNRVNA ENKKLTEMLT VMCQNYNSLR SQLTEYLSKQ NSSTSGADQD
101: QNSDGSKKRK VENNNNEIVK SSVQLLNSDS SSSDEDSSPN KPREEHIKTK TSRVYMRTEP SDTSLIVKDG YQWRKYGQKV TRDNPSPRAY FKCSFAPTCP
201: VKKKLQRSVE DQSILVATYE GEHNHSKVDT VTTTSPSSRF NPKNNVSGNY TASVMPSSTT NISRPKPMLT LDLAEPKTSQ NDVKKVNSNT SSASGHKRKS
301: PGNDHQQHQN RPEFQHFLIE QMASSLTKDP SFQAALAAAI SGKFLQNNNN NTIDK

Best Arabidopsis Sequence Match ( AT1G80840.1 )
(BLAST)

001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK

Arabidopsis Description

WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.