Factsheet for PGSC0003DMT400017859

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067430.2.1	Tomato	nucleus	92.1	92.73
GSMUA_Achr1P05240_001	Banana	nucleus	28.22	38.34
VIT_14s0108g00120.t01	Wine grape	nucleus	41.76	36.85
KRH01137	Soybean	nucleus	44.02	36.04
CDX69548	Canola	nucleus	34.76	35.65
Bra006283.1-P	Field mustard	nucleus	42.21	35.48
CDY63770	Canola	nucleus	41.08	35.41
CDX70593	Canola	nucleus	41.99	35.36
CDX78611	Canola	nucleus	41.99	35.29
Bra023505.1-P	Field mustard	nucleus	40.41	34.69
KRH40121	Soybean	nucleus	42.21	34.57
AT5G15130.1	Thale cress	nucleus	42.66	34.49
CDX69549	Canola	nucleus	42.89	34.48
Bra008719.1-P	Field mustard	nucleus	42.66	34.3
CDX85052	Canola	nucleus	42.44	34.18
KRG93506	Soybean	nucleus	37.7	34.08
TraesCS3D01G113300.1	Wheat	nucleus	36.12	32.52
TraesCS3B01G130000.1	Wheat	nucleus	35.89	32.45
Zm00001d045375_P001	Maize	nucleus	18.06	32.0
CDY28692	Canola	nucleus	38.83	31.97
Bra040505.1-P	Field mustard	nucleus	38.6	31.96
CDX85563	Canola	nucleus	22.12	31.61
PGSC0003DMT400046570	Potato	nucleus	36.57	30.86
HORVU3Hr1G020210.2	Barley	nucleus	36.34	30.61
PGSC0003DMT400076591	Potato	nucleus	27.99	30.02
Os01t0185900-01	Rice	nucleus	34.31	29.98
PGSC0003DMT400073710	Potato	nucleus	14.45	29.49
Os06t0146250-00	Rice	nucleus	39.05	28.64
TraesCS7D01G092500.2	Wheat	nucleus	38.15	28.6
Zm00001d039532_P001	Maize	nucleus	34.76	28.15
Zm00001d008794_P001	Maize	nucleus	34.31	28.15
EES02331	Sorghum	nucleus	34.54	27.92
HORVU7Hr1G021260.1	Barley	nucleus	38.37	27.91
TraesCS7D01G092600.1	Wheat	nucleus	37.92	27.77
TraesCS7D01G092400.1	Wheat	nucleus	37.47	27.44
TraesCS7D01G092300.1	Wheat	nucleus	37.25	27.27
PGSC0003DMT400019058	Potato	nucleus	15.58	26.44
OQU75809	Sorghum	nucleus	37.25	26.4
PGSC0003DMT400019061	Potato	nucleus	14.9	26.09
PGSC0003DMT400056725	Potato	nucleus	28.22	25.2
PGSC0003DMT400042400	Potato	nucleus	28.89	23.15
PGSC0003DMT400073396	Potato	nucleus	18.28	22.5
PGSC0003DMT400038852	Potato	nucleus	27.54	21.9
PGSC0003DMT400051047	Potato	nucleus	16.7	20.85

Protein Annotations

EntrezGene:102604650	MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0006952
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	UniProt:M1A9L5	PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG402006935	PGSC:PGSC0003DMG402006935	EnsemblPlants:PGSC0003DMT400017859
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF24	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00029587DD
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006357198.1	SEG:seg	:	:

Description

Avr9/Cf-9 rapidly elicited protein 126 [Source:PGSC_GENE;Acc:PGSC0003DMG402006935]

Coordinates

chr2:-:25951421..25953871

Molecular Weight (calculated)

48679.7 Da

IEP (calculated)

6.661

GRAVY (calculated)

-0.668

Length

443 amino acids

Sequence
(BLAST)

001: MEKKLDNSIS RANNHEEEDI KKALKDDEFK SAIAEVNEIK LENARLKLLL QQIEKDYTSL QTRFFNICQP DLKKSGSPTC THENIADEEE SELVSLRLGR
101: SPSPSESKKV DKKRSYDKTI EDYPSCDGQS NDGLKLGLDY STRISEPDLI KPSNDPTPGP TSEVVKTVKR CDDESVKKDA GDDEVSQPNV KRARVSVRTK
201: CDYPTINDGC QWRKYGQKIS RGNPCPRSYY RCSVAPLCPV RKQVQRCLED MSILITTYEG THNHSLPIEA TAMASTTSAA ASMLLSGSST SSKNFPNLPN
301: ISKTTPLYLS NSSSNPFPTI TLDFTTFPTT SSFTSFNFPS NFQSGSGFLS NSLSFSSPES TTMTKILGNG GLNYDSTSTL PYHNNLINIG SSQKQFDTSS
401: NKLKEDSSQQ ALTETLTKAI TSDPSFQSVL AAAISSMVGA TKT

Best Arabidopsis Sequence Match ( AT5G15130.1 )
(BLAST)

001: MEVLLKLPSS ESPLKDKFGS VQIHEANKGD GDHQELESAK AEMSEVKEEN EKLKGMLERI ESDYKSLKLR FFDIIQQEPS NTATKNQNMV DHPKPTTTDL
101: SSFDQERELV SLSLGRRSSS PSDSVPKKEE KTDAISAEVN ADEELTKAGL TLGINNGNGG EPKEGLSMEN RANSGSEEAW APGKVTGKRS SPAPASGGDA
201: DGEAGQQNHV KRARVCVRAR CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCADD MSILITTYEG THSHSLPLSA TTMASTTSAA
301: ASMLLSGSSS SPAAEMIGNN LYDNSRFNNN NKSFYSPTLH SPLHPTVTLD LTAPQHSSSS SSSLLSLNFN KFSNSFQRFP STSLNFSSTS STSSNPSTLN
401: LPAIWGNGYS SYTPYPYNNV QFGTSNLGKT VQNSQSLTET LTKALTSDPS FHSVIAAAIS TMVGSNGEQQ IVGPRHSISN NIQQTNTTNN NKGCGGYFSS
501: LLMSNIMASN QTGASLDQPS SQLPPFSMFK NSSSSSSTTN FVNKEEKS

Arabidopsis Description

WRKY72Probable WRKY transcription factor 72 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.