Factsheet for PGSC0003DMT400042400

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080890.2.1	Tomato	nucleus	94.94	95.45
PGSC0003DMT400056725	Potato	nucleus	64.56	71.98
VIT_10s0116g01200.t01	Wine grape	nucleus	63.83	65.98
CDX97845	Canola	nucleus	27.12	62.24
KRH11472	Soybean	nucleus	59.86	59.43
GSMUA_Achr3P03090_001	Banana	nucleus	41.05	59.42
KRH36485	Soybean	nucleus	57.5	58.78
KRH02033	Soybean	nucleus	51.54	58.28
KRH51128	Soybean	nucleus, plastid	53.71	57.45
GSMUA_Achr5P16750_001	Banana	nucleus	49.73	56.58
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	35.8	56.57
CDX82900	Canola	nucleus	51.36	54.51
AT4G22070.1	Thale cress	nucleus	52.26	53.72
Bra013584.1-P	Field mustard	nucleus	51.54	52.97
GSMUA_Achr10P...	Banana	nucleus	47.38	52.82
CDY21301	Canola	nucleus	47.92	52.27
AT1G62300.1	Thale cress	nucleus	52.08	52.08
CDX90863	Canola	nucleus	47.74	52.07
CDY12937	Canola	nucleus	51.9	51.99
CDY19535	Canola	nucleus	51.72	51.81
Bra027057.1-P	Field mustard	nucleus	51.72	51.81
PGSC0003DMT400038852	Potato	nucleus	52.08	51.71
AT4G04450.1	Thale cress	nucleus	49.37	51.7
Bra000793.1-P	Field mustard	nucleus	48.46	51.64
CDX94553	Canola	nucleus	45.75	51.53
GSMUA_Achr6P05880_001	Banana	nucleus	43.94	51.05
GSMUA_Achr2P15200_001	Banana	nucleus	48.64	50.56
CDY16669	Canola	nucleus	44.85	50.41
GSMUA_Achr10P...	Banana	nucleus	46.47	50.39
GSMUA_Achr6P13630_001	Banana	nucleus	47.2	49.81
Bra029491.1-P	Field mustard	nucleus	43.94	49.39
Bra034482.1-P	Field mustard	nucleus	43.76	47.73
CDY08634	Canola	nucleus	42.5	46.72
CDY24892	Canola	nucleus	43.94	46.37
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	39.6	44.88
TraesCS3A01G167200.1	Wheat	nucleus	43.04	41.39
TraesCS3B01G199000.2	Wheat	nucleus	43.04	41.03
Zm00001d039245_P001	Maize	nucleus	39.24	40.11
EES02155	Sorghum	nucleus	40.14	38.95
HORVU3Hr1G033740.2	Barley	nucleus, plastid	43.4	38.16
TraesCS3D01G173300.2	Wheat	plastid	42.86	37.26
PGSC0003DMT400019058	Potato	nucleus	15.01	31.8
PGSC0003DMT400073710	Potato	nucleus	12.48	31.8
PGSC0003DMT400076591	Potato	nucleus	23.15	30.99
PGSC0003DMT400019061	Potato	nucleus	13.74	30.04
PGSC0003DMT400046570	Potato	nucleus	28.39	29.9
PGSC0003DMT400017859	Potato	nucleus	23.15	28.89
PGSC0003DMT400073396	Potato	nucleus	18.81	28.89
PGSC0003DMT400051047	Potato	nucleus	17.54	27.32
Os01t0246700-01	Rice	nucleus	19.17	25.67

Protein Annotations

EntrezGene:102605073	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:ABN69038	ProteinID:ABN69038.1	ncoils:Coil
EMBL:EF411203	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	UniProt:M1BCZ2	PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400016441	PGSC:PGSC0003DMG400016441
EnsemblPlants:PGSC0003DMT400042400	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF31	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI000294FC26	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006348143.1	SEG:seg	:

Description

WRKY protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016441]

Coordinates

chr2:-:36596829..36599333

Molecular Weight (calculated)

60065.3 Da

IEP (calculated)

7.460

GRAVY (calculated)

-0.641

Length

553 amino acids

Sequence
(BLAST)

001: MDKGWGLTLE TSSSNSDRAG FFKNKPVFGF NLSPKYNAGE MFSSSDEKRS IVNEVDFFSD KKPIVKKENS QGDNSIRTDD QFVVNTGLQL VTANAGSDQS
101: TVDDGVSSEV LEDKRAKIQQ LAQLQVELER MNSENQRLKG MLTQVNSSYS ALQMHLVTLM QQQQQQQLNS KTENTHPHEV VGAKSDEEKK KENNGTIVPR
201: QFMELGPSGS KVDPMDEPSH SHSSSEERTL SGSPRNNMEL VSRDKAINRE ESPESESWVP NKAPKLMNSP SKPVEQSTEA TMRKARVSVR ARSEAPMISD
301: GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA DDRTILITTY EGAHNHPLPP AAMAMASTTS AAANMLLSGS MPSADGLMNT NFLARAMLPC
401: SSNMATISAS APFPTVTLDL TAQNPNGALS NYHQRINQAN PHFQFPLPAG LNHPNFAASM SAPQMPHILG QPLYNQSKFS GLQISQDNIH HHPSISHDTL
501: SAATAAITAD PNFTAALAAA ISSIIGGSHP NNGNSPMSGP SSNNNNTSSF PGN

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.