Factsheet for VIT_10s0116g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042400	Potato	nucleus	65.98	63.83
Solyc02g080890.2.1	Tomato	nucleus	65.61	63.82
PGSC0003DMT400056725	Potato	nucleus	58.88	63.51
CDX97845	Canola	nucleus	28.6	63.49
Solyc02g032950.2.1	Tomato	nucleus	58.88	63.25
KRH36485	Soybean	nucleus	61.68	61.0
KRH11472	Soybean	nucleus	63.18	60.68
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	39.44	60.29
GSMUA_Achr5P16750_001	Banana	nucleus	53.27	58.64
KRH02033	Soybean	nucleus	52.52	57.46
GSMUA_Achr3P03090_001	Banana	nucleus	40.93	57.33
KRH51128	Soybean	nucleus, plastid	54.02	55.9
CDX82900	Canola	nucleus	53.83	55.28
GSMUA_Achr6P05880_001	Banana	nucleus	48.22	54.2
GSMUA_Achr2P15200_001	Banana	nucleus	53.83	54.14
VIT_12s0059g00880.t01	Wine grape	nucleus	59.81	53.96
AT4G22070.1	Thale cress	nucleus	54.21	53.9
Bra013584.1-P	Field mustard	nucleus	54.21	53.9
CDY21301	Canola	nucleus	51.03	53.85
CDX90863	Canola	nucleus	50.84	53.65
GSMUA_Achr10P...	Banana	nucleus	49.53	53.43
Bra000793.1-P	Field mustard	nucleus	51.4	52.99
AT4G04450.1	Thale cress	nucleus	51.59	52.27
AT1G62300.1	Thale cress	nucleus	53.83	52.08
CDX94553	Canola	nucleus	47.48	51.73
GSMUA_Achr6P13630_001	Banana	nucleus	50.65	51.72
CDY12937	Canola	nucleus	52.9	51.27
CDY19535	Canola	nucleus	52.9	51.27
GSMUA_Achr10P...	Banana	nucleus	48.78	51.18
Bra027057.1-P	Field mustard	nucleus	52.71	51.09
CDY16669	Canola	nucleus	46.92	51.02
Bra029491.1-P	Field mustard	nucleus	45.98	50.0
CDY08634	Canola	nucleus	44.86	47.71
Bra034482.1-P	Field mustard	nucleus	45.05	47.53
CDY24892	Canola	nucleus	45.61	46.56
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	42.24	46.31
VIT_19s0090g00840.t01	Wine grape	nucleus	43.93	42.65
TraesCS3A01G167200.1	Wheat	nucleus	43.55	40.52
TraesCS3B01G199000.2	Wheat	nucleus	43.93	40.52
Zm00001d039245_P001	Maize	nucleus	40.0	39.56
EES02155	Sorghum	nucleus	41.31	38.77
VIT_07s0005g02570.t01	Wine grape	nucleus	36.64	38.74
HORVU3Hr1G033740.2	Barley	nucleus, plastid	43.93	37.36
TraesCS3D01G173300.2	Wheat	plastid	43.74	36.79
VIT_04s0008g05750.t01	Wine grape	nucleus	16.82	34.48
VIT_09s0018g00240.t01	Wine grape	nucleus	19.25	33.12
VIT_04s0008g05760.t01	Wine grape	nucleus	18.88	31.86
VIT_14s0108g00120.t01	Wine grape	nucleus	28.79	30.68
VIT_12s0055g00340.t01	Wine grape	nucleus	25.98	28.54
VIT_17s0000g05810.t01	Wine grape	nucleus	31.03	27.44
VIT_01s0026g01730.t01	Wine grape	nucleus	30.09	27.1
Os01t0246700-01	Rice	nucleus	20.19	26.15

Protein Annotations

EntrezGene:100255611	wikigene:100255611	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:AM465489	ProteinID:CAN70362
ProteinID:CAN70362.1	ProteinID:CCB48186	ProteinID:CCB48186.1	ncoils:Coil	UniProt:F6H7H0	EMBL:FN595248
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	EntrezGene:LOC100255611	wikigene:LOC100255611	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429
PANTHER:PTHR31429:SF31	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00019842DA	ArrayExpress:VIT_10s0116g01200	EnsemblPlantsGene:VIT_10s0116g01200
EnsemblPlants:VIT_10s0116g01200.t01	unigene:Vvi.13273	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002263115	RefSeq:XP_002263115.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:618665..621093

Molecular Weight (calculated)

57463.1 Da

IEP (calculated)

6.444

GRAVY (calculated)

-0.570

Length

535 amino acids

Sequence
(BLAST)

001: MDKGWGLTLD SIAINSFLNK RSRGILESGP MLDMPVGDER REVDFFAEKT RSVSVKKENS HVDEAAITDL DVNTGLNLLT ANAGSDQSTV EDENPDRENK
101: RAKIEVAQLQ VELERMNAEN QKLRGMLNQV TNNYSTLQMH LVTLMQQQSQ QNRGAESLQE HGSVGGKSDE KKHEVAGAVV PRQFIDLGPT ATADTDEPSQ
201: SSSEERTRDL SGSPQNHQEN GKGAGREESP ESETQGWVQN KASKLSPPKT IDQSAEATMR KARVSVRARS EAPMITDGCQ WRKYGQKMAK GNPCPRAYYR
301: CTMAVGCPVR KQVQRCAEDR SILITTYEGT HNHPLPPAAM AMASTTSAAA NMLLSGSMSS ADGLMNPNFL ARTILPCSSN MATISASAPF PTVTLDLTHT
401: PSPLQYQRPT SQFPVPFAAP AQSFPSAQTS SLPQVFSQAL YNQSKFSGLQ LSQDMESAHQ APPTLHQPQP ASLADTVSAA TAAITADPNF TAALAAAITS
501: IIGGGAAHPN TTINSTSNAT NSSNTNKISS FPTGN

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.