Factsheet for VIT_01s0026g01730.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89544	Soybean	nucleus	18.52	67.48
VIT_14s0108g00120.t01	Wine grape	nucleus	47.64	56.37
VIT_17s0000g05810.t01	Wine grape	nucleus	49.33	48.43
KRH74791	Soybean	nucleus	38.55	44.99
KRH33270	Soybean	nucleus	23.06	44.92
Solyc05g007110.2.1	Tomato	nucleus	29.12	44.13
KRH69334	Soybean	nucleus	38.89	43.83
KRG99150	Soybean	nucleus	38.05	42.72
TraesCS3B01G130000.1	Wheat	nucleus	33.67	40.82
TraesCS3D01G113300.1	Wheat	nucleus	33.5	40.45
Os06t0146250-00	Rice	nucleus	40.74	40.07
Os01t0185900-01	Rice	nucleus	34.01	39.84
Zm00001d045375_P001	Maize	nucleus	16.5	39.2
TraesCS7D01G092500.2	Wheat	nucleus	38.72	38.92
HORVU7Hr1G021260.1	Barley	nucleus	39.39	38.42
OQU75809	Sorghum	nucleus	40.24	38.24
HORVU3Hr1G020210.2	Barley	nucleus	33.67	38.02
TraesCS7D01G092600.1	Wheat	nucleus	38.05	37.36
Zm00001d008794_P001	Maize	nucleus	33.84	37.22
EES02331	Sorghum	nucleus	33.67	36.5
Zm00001d039532_P001	Maize	nucleus	33.5	36.38
TraesCS7D01G092400.1	Wheat	nucleus	33.0	32.4
TraesCS7D01G092300.1	Wheat	nucleus	32.66	32.07
VIT_07s0005g02570.t01	Wine grape	nucleus	26.77	31.42
VIT_04s0008g05750.t01	Wine grape	nucleus	13.3	30.27
VIT_10s0116g01200.t01	Wine grape	nucleus	27.1	30.09
VIT_09s0018g00240.t01	Wine grape	nucleus	15.49	29.58
VIT_12s0055g00340.t01	Wine grape	nucleus	24.24	29.57
VIT_12s0059g00880.t01	Wine grape	nucleus	27.95	27.99
VIT_04s0008g05760.t01	Wine grape	nucleus	14.31	26.81
VIT_19s0090g00840.t01	Wine grape	nucleus	24.41	26.32

Protein Annotations

EntrezGene:100262076	wikigene:100262076	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CBI32009	ProteinID:CBI32009.3
ncoils:Coil	UniProt:D7TND6	EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100262076	wikigene:LOC100262076
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF24	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI0001982B02	ArrayExpress:VIT_01s0026g01730	EnsemblPlantsGene:VIT_01s0026g01730	EnsemblPlants:VIT_01s0026g01730.t01	unigene:Vvi.23742	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002270659	RefSeq:XP_002270659.2	RefSeq:XP_010652374.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:10977206..10982627

Molecular Weight (calculated)

64342.6 Da

IEP (calculated)

6.401

GRAVY (calculated)

-0.689

Length

594 amino acids

Sequence
(BLAST)

001: MEAAALEIPV SGDPVKGEET TLMKFNGGDK GGVCDSMKVH LVAATERSSM ENNSIDPSTQ KNQEDRIKSA KEEVGEVREE NERLKQILAK IKKDYQSLQM
101: QFSEIAQHEE ARKSTDTILT HQEEEEEETD LISLSLGRVS SAESKKDDKK TSFLSGKGKG DEKMDEGLAL GLECKFEPAP TEHMMNASPE NSFEGPKEEE
201: PSTETWPPSK ILKMGRSRDE EVLEQTHLKK ARVSVRARCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVSPSCPVRK QVQRCAEDTS ILITTYEGTH
301: NHPLPVSATA MASTTSAAAS MLRSGSSTSQ PGMEAFATSS TANLHGLNFS IPQNSRSQQF YFPNSSFSTS NSHPTITLDL TAPTASHFNR LSSSFPSAPR
401: YPATCLNFSS SSSSSPLDPN NLPTSWGTLP SYGALSSYNK NQIGPFNFGM QPPSQENIYQ PYMQKINNQA PSQQSLTETI ATATKAIAAD PTFRSALAAV
501: ITSFVGNAGG AGGGENHVKG ENPSHNLKWG EFLSVNSALA SSHNGVGCAS SYLNRSSSAN SQQQGNLISY PPSFPFSVPK SASASPSDHK DNIQ

Best Arabidopsis Sequence Match ( AT5G15130.1 )
(BLAST)

001: MEVLLKLPSS ESPLKDKFGS VQIHEANKGD GDHQELESAK AEMSEVKEEN EKLKGMLERI ESDYKSLKLR FFDIIQQEPS NTATKNQNMV DHPKPTTTDL
101: SSFDQERELV SLSLGRRSSS PSDSVPKKEE KTDAISAEVN ADEELTKAGL TLGINNGNGG EPKEGLSMEN RANSGSEEAW APGKVTGKRS SPAPASGGDA
201: DGEAGQQNHV KRARVCVRAR CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCADD MSILITTYEG THSHSLPLSA TTMASTTSAA
301: ASMLLSGSSS SPAAEMIGNN LYDNSRFNNN NKSFYSPTLH SPLHPTVTLD LTAPQHSSSS SSSLLSLNFN KFSNSFQRFP STSLNFSSTS STSSNPSTLN
401: LPAIWGNGYS SYTPYPYNNV QFGTSNLGKT VQNSQSLTET LTKALTSDPS FHSVIAAAIS TMVGSNGEQQ IVGPRHSISN NIQQTNTTNN NKGCGGYFSS
501: LLMSNIMASN QTGASLDQPS SQLPPFSMFK NSSSSSSTTN FVNKEEKS

Arabidopsis Description

WRKY72Probable WRKY transcription factor 72 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.