Factsheet for VIT_07s0005g02570.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96611	Soybean	nucleus	52.96	51.94
KRH69145	Soybean	nucleus	49.01	51.24
KRH68345	Soybean	endoplasmic reticulum, vacuole	53.75	50.28
KRH33656	Soybean	nucleus	47.04	49.28
GSMUA_Achr2P18390_001	Banana	nucleus	33.6	46.32
GSMUA_Achr11P...	Banana	nucleus	35.77	43.2
Os05t0137500-00	Rice	nucleus	38.93	41.56
Os01t0289600-00	Rice	nucleus, plastid	32.02	39.42
EES00609	Sorghum	nucleus	45.06	39.18
Zm00001d040554_P001	Maize	nucleus	44.47	38.73
Zm00001d008190_P001	Maize	nucleus	37.15	37.08
VIT_10s0116g01200.t01	Wine grape	nucleus	38.74	36.64
Zm00001d024768_P001	Maize	nucleus	38.54	35.65
VIT_04s0008g05750.t01	Wine grape	nucleus	18.38	35.63
VIT_12s0059g00880.t01	Wine grape	nucleus	40.51	34.57
VIT_19s0090g00840.t01	Wine grape	nucleus	34.39	31.58
VIT_09s0018g00240.t01	Wine grape	nucleus	19.17	31.19
VIT_14s0108g00120.t01	Wine grape	nucleus	29.45	29.68
VIT_04s0008g05760.t01	Wine grape	nucleus	18.58	29.65
KXG21247	Sorghum	nucleus	32.02	28.57
VIT_12s0055g00340.t01	Wine grape	nucleus	26.09	27.1
VIT_01s0026g01730.t01	Wine grape	nucleus	31.42	26.77
VIT_17s0000g05810.t01	Wine grape	nucleus	30.63	25.62

Protein Annotations

EntrezGene:100264000	wikigene:100264000	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB60072	ProteinID:CCB60072.1
ncoils:Coil	UniProt:F6HZF7	EMBL:FN596502	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
EntrezGene:LOC100264000	wikigene:LOC100264000	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF30
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0001983A27	ArrayExpress:VIT_07s0005g02570	EnsemblPlantsGene:VIT_07s0005g02570	EnsemblPlants:VIT_07s0005g02570.t01
unigene:Vvi.12476	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002281194	RefSeq:XP_002281194.1	SEG:seg

Description

No Description!

Coordinates

chr7:+:4899940..4903113

Molecular Weight (calculated)

54663.2 Da

IEP (calculated)

7.994

GRAVY (calculated)

-0.646

Length

506 amino acids

Sequence
(BLAST)

001: MDKPRPEFAF LRSDDFLRPN SSVHETVSTD QKQPIKEMDF FSRNNQHNQP NEQESNRGSS TRTEAAAGVN TGLDLLSLNT GIQRSGNDNL NIRPKTEFDT
101: LQVELERVRD ENRKLRSMLE QITKSYGDLQ GQLLMAMGEA ARLKKDDTTC KPGTRQLMDP RPSGGLDINE ASVSDEKNQE GSVSPANTTE VMSNESEHHK
201: IPSAGKKTCF GDGPDQGSTH SWGSPKSPTV LDPSKSEEQA SEVPFRKARV SVRARSEAPL ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA AGCPVRKQVQ
301: RCAEDKTILI TTYEGNHNHP LPPAATAMAN STSAAAAMLL SGSNTSKEAL VNSAGFFHPM PYLSTMASLS ASAPFPTITL DLTQGTNPMH FHRGPPSSTS
401: FPSPLHACPQ LIGQPLYAPP KIPVLPSAQM GHRHPSMVET VTAAITSDPN FTAALAAAIS TIIGAPRSSY GNTPNSHGEN SKPFSGMPAL PGSPQLPQSC
501: TTFSTN

Best Arabidopsis Sequence Match ( AT4G01720.1 )
(BLAST)

001: MEEHIQDRRE IAFLHSGEFL HGDSDSKDHQ PNESPVERHH ESSIKEVDFF AAKSQPFDLG HVRTTTIVGS SGFNDGLGLV NSCHGTSSND GDDKTKTQIS
101: RLKLELERLH EENHKLKHLL DEVSESYNDL QRRVLLARQT QVEGLHHKQH EDVPQAGSSQ ALENRRPKDM NHETPATTLK RRSPDDVDGR DMHRGSPKTP
201: RIDQNKSTNH EEQQNPHDQL PYRKARVSVR ARSDATTVND GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDTTILTTTY EGNHNHPLPP
301: SATAMAATTS AAAAMLLSGS SSSNLHQTLS SPSATSSSSF YHNFPYTSTI ATLSASAPFP TITLDLTNPP RPLQPPPQFL SQYGPAAFLP NANQIRSMNN
401: NNQQLLIPNL FGPQAPPREM VDSVRAAIAM DPNFTAALAA AISNIIGGGN NDNNNNTDIN DNKVDAKSGG SSNGDSPQLP QSCTTFSTN

Arabidopsis Description

WRKY47Probable WRKY transcription factor 47 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.