CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040554_P001	Maize	nucleus	81.96	82.1
Zm00001d008190_P001	Maize	nucleus	62.37	71.6
Os01t0289600-00	Rice	nucleus, plastid	39.69	56.2
VIT_07s0005g02570.t01	Wine grape	nucleus	39.18	45.06
GSMUA_Achr2P18390_001	Banana	nucleus	27.49	43.6
KRG96611	Soybean	nucleus	37.97	42.83
KRH68345	Soybean	endoplasmic reticulum, vacuole	38.49	41.4
GSMUA_Achr11P...	Banana	nucleus	29.04	40.33
KRH69145	Soybean	nucleus	32.65	39.26
KRH33656	Soybean	nucleus	32.47	39.13
KXG21247	Sorghum	nucleus	30.07	30.86
EES03177	Sorghum	nucleus	17.01	29.82
EES02155	Sorghum	nucleus	28.52	29.12
EER98905	Sorghum	nucleus, plastid	15.64	27.83
EES02331	Sorghum	nucleus	24.91	26.46
KXG22547	Sorghum	nucleus	27.84	25.67
EER88729	Sorghum	nucleus	15.12	25.29
EER90124	Sorghum	nucleus	14.78	25.15
KXG35639	Sorghum	nucleus	12.71	25.08
OQU75809	Sorghum	nucleus	25.26	23.52
EES04642	Sorghum	nucleus	14.6	23.35
EES05866	Sorghum	nucleus	21.31	21.45

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8078145	UniProt:C5XI05	ncoils:Coil	EnsemblPlants:EES00609
ProteinID:EES00609	ProteinID:EES00609.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429
PANTHER:PTHR31429:SF29	SMART:SM00774	EnsemblPlantsGene:SORBI_3003G138400	SUPFAM:SSF118290	UniParc:UPI0001A843D8	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002455489.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:13400561..13405829

Molecular Weight (calculated)

60585.9 Da

IEP (calculated)

7.267

GRAVY (calculated)

-0.459

Length

582 amino acids

Sequence
(BLAST)

001: METRPERHRH DHVHEQQAQE GEEDDAAAAV MEHGAALSLQ RGATLFGRRR QHDEEADRRR RGEIREVDFF SRDSGARGQD DGGGRGVPGG GRDDVNIGLD
101: LLTTATAATT SAAGEEMMAV KNQKIEASAV EVELRRVVEE NRRLRGMLEE LNRSYGALYQ QLLQVTQHRQ HPADLMINRS SLAHTHLTTT AASHNTSSTR
201: QLLEARASST AMAQPHAVAA GGDDEASDGA EEASPSLSNG GNNNDDADGK RKTSPDRTAP PRENGGEQAS SELPGRKARV SVRARSEAPM ISDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VACPVRKQVQ RCAEDKTILV TTYEGHHNHP LPPAATTMAN TTSAAAAMLL SGPATSRDGA AAALLGHPAL FHHSSSIPYA
401: STMATLSASA PFPTITLDLT QAPGGVAGSG GGGLLPHGLG LHRPPGGIHP VTAVPAMPFP VPSPLASMFL PQRAPTGPPM PTGLQVARQQ QSVMMETVTA
501: AIAADPNFTT ALAAAISSVM AGGAAHQAQP TPRGSNIIGI AAGDQANGSA GAAAIAGPTA AGAHAASAGS PRFATQSCTT ST

Best Arabidopsis Sequence Match ( AT4G04450.1 )
(BLAST)

001: MFRFPVSLGG GPRENLKPSD EQHQRAVVNE VDFFRSAEKR DRVSREEQNI IADETHRVHV KRENSRVDDH DDRSTDHINI GLNLLTANTG SDESMVDDGL
101: SVDMEEKRTK CENAQLREEL KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV PRQFIDLGPH SDEVSSEERT
201: TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA
401: TISASAPFPT ITLDLTESPN GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA ATAAIASNPN FAAALAAAIT
501: SIINGSNNQQ NGNNNNSNVT TSNVDNRQ

Arabidopsis Description

WRKY42WRKY transcription factor 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.