Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020492_P001 | Maize | nucleus | 77.68 | 84.11 |
| Zm00001d005749_P001 | Maize | nucleus | 71.25 | 66.38 |
| Os09t0417600-02 | Rice | nucleus | 65.14 | 65.14 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 63.3 | 62.73 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 62.39 | 61.63 |
| TraesCS5A01G225600.1 | Wheat | nucleus | 61.77 | 61.03 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 61.47 | 60.73 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 63.0 | 55.53 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 60.86 | 50.9 |
| Bra019123.1-P | Field mustard | nucleus | 26.3 | 44.33 |
| Solyc12g042590.1.1 | Tomato | nucleus | 28.44 | 43.06 |
| PGSC0003DMT400073710 | Potato | nucleus | 27.83 | 41.94 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 39.76 | 41.8 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 35.47 | 40.14 |
| KXG35639 | Sorghum | nucleus | 36.09 | 40.0 |
| KRH23643 | Soybean | nucleus | 37.31 | 39.48 |
| CDY22299 | Canola | nucleus | 34.25 | 38.62 |
| Bra008435.1-P | Field mustard | nucleus | 34.25 | 38.62 |
| KRH44560 | Soybean | nucleus | 36.7 | 38.34 |
| CDY67287 | Canola | nucleus | 33.95 | 38.28 |
| KRH47344 | Soybean | nucleus | 36.09 | 37.94 |
| AT1G80840.1 | Thale cress | nucleus | 34.56 | 37.42 |
| CDX67971 | Canola | nucleus | 33.95 | 37.37 |
| Bra003588.1-P | Field mustard | nucleus | 33.95 | 37.37 |
| CDX87347 | Canola | nucleus | 34.25 | 37.33 |
| Bra035148.1-P | Field mustard | nucleus | 34.25 | 37.33 |
| CDX88573 | Canola | nucleus | 34.25 | 37.21 |
| CDX79347 | Canola | nucleus | 33.64 | 36.91 |
| Solyc08g067340.2.1 | Tomato | nucleus | 28.44 | 36.76 |
| KRH15674 | Soybean | nucleus | 31.5 | 36.52 |
| PGSC0003DMT400019058 | Potato | nucleus | 29.05 | 36.4 |
| KRH61669 | Soybean | nucleus | 24.46 | 36.36 |
| CDX72327 | Canola | nucleus | 31.5 | 36.14 |
| KRH09652 | Soybean | nucleus | 36.39 | 36.06 |
| Solyc08g067360.2.1 | Tomato | nucleus | 28.44 | 36.05 |
| PGSC0003DMT400019061 | Potato | nucleus | 27.52 | 35.57 |
| CDX75196 | Canola | nucleus | 30.58 | 35.34 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 33.95 | 35.02 |
| AT4G31800.1 | Thale cress | nucleus | 32.72 | 34.52 |
| Solyc06g068460.2.1 | Tomato | nucleus | 37.61 | 34.17 |
| PGSC0003DMT400073396 | Potato | nucleus | 37.61 | 34.17 |
| AT2G25000.1 | Thale cress | nucleus | 28.13 | 33.95 |
| EER88729 | Sorghum | nucleus | 35.17 | 33.05 |
| EER90124 | Sorghum | nucleus | 34.56 | 33.04 |
| Bra010220.1-P | Field mustard | nucleus | 30.89 | 32.79 |
| CDY39879 | Canola | nucleus | 30.28 | 32.25 |
| EES04642 | Sorghum | nucleus | 35.78 | 32.14 |
| KRH05350 | Soybean | nucleus | 30.58 | 32.05 |
| CDX68787 | Canola | nucleus | 31.19 | 31.97 |
| Bra011299.1-P | Field mustard | nucleus | 30.89 | 31.86 |
| PGSC0003DMT400051047 | Potato | nucleus | 34.56 | 31.83 |
| Solyc03g116890.2.1 | Tomato | nucleus | 33.64 | 31.43 |
| Bra023983.1-P | Field mustard | nucleus | 31.5 | 29.86 |
| CDY70096 | Canola | nucleus | 31.5 | 29.86 |
| KRH52329 | Soybean | nucleus | 28.13 | 29.77 |
| EES03177 | Sorghum | nucleus | 18.96 | 18.67 |
| EES00609 | Sorghum | nucleus | 27.83 | 15.64 |
| EES02331 | Sorghum | nucleus | 25.99 | 15.51 |
| EES02155 | Sorghum | nucleus | 26.61 | 15.26 |
| KXG21247 | Sorghum | nucleus | 24.16 | 13.93 |
| OQU75809 | Sorghum | nucleus | 26.61 | 13.92 |
| KXG22547 | Sorghum | nucleus | 25.08 | 13.0 |
| EES05866 | Sorghum | nucleus | 22.94 | 12.98 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | EntrezGene:8060252 | UniProt:C5XCU5 | ncoils:Coil | EnsemblPlants:EER98905 |
| ProteinID:EER98905 | ProteinID:EER98905.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009617 | GO:GO:0009620 | GO:GO:0009719 | GO:GO:0009751 | GO:GO:0009987 |
| GO:GO:0010200 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 |
| PANTHER:PTHR31429 | PANTHER:PTHR31429:SF3 | SMART:SM00774 | EnsemblPlantsGene:SORBI_3002G202700 | SUPFAM:SSF118290 | unigene:Sbi.15923 |
| UniParc:UPI0001A83FDC | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | RefSeq:XP_002462384.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr2:-:59258884..59260622
Molecular Weight (calculated)
34722.4 Da
IEP (calculated)
6.878
GRAVY (calculated)
-0.543
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLMDSARRA GCSPSPVCLD LSVGLSPSSP GSSGPETTAD TDDRLDRPAA GCRVASSLSD EQAKTLEAKL TQVSEENRRL TEMIAYLYAS QVARQSSSSP
101: DTTSRKRSRD SLEPPSNSSD GNANAKAEPG DHAAVESALS DEGTCRRIKV TRVCTRIDPA DATLTVKDGY QWRKYGQKVT RDNPSPRAYF RCAYAPSCPV
201: KKKVQRSAED SSLLVATYEG EHNHPSPTRA GELPSSASAT ASGPVPCSIS INSSGPTITL DLTKNGGGGG VRVLDAAEAP DLKKLCQEIA SPDFRTALVE
301: QMARSLTSDS KFTHALAAAI LQQLPEY
101: DTTSRKRSRD SLEPPSNSSD GNANAKAEPG DHAAVESALS DEGTCRRIKV TRVCTRIDPA DATLTVKDGY QWRKYGQKVT RDNPSPRAYF RCAYAPSCPV
201: KKKVQRSAED SSLLVATYEG EHNHPSPTRA GELPSSASAT ASGPVPCSIS INSSGPTITL DLTKNGGGGG VRVLDAAEAP DLKKLCQEIA SPDFRTALVE
301: QMARSLTSDS KFTHALAAAI LQQLPEY
001: MDGSSFLDIS LDLNTNPFSA KLPKKEVSVL ASTHLKRKWL EQDESASELR EELNRVNSEN KKLTEMLARV CESYNELHNH LEKLQSRQSP EIEQTDIPIK
101: KRKQDPDEFL GFPIGLSSGK TENSSSNEDH HHHHQQHEQK NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLTVKDGFQ WRKYGQKVTR DNPSPRAYFR
201: CSFAPSCPVK KKVQRSAEDP SLLVATYEGT HNHLGPNASE GDATSQGGSS TVTLDLVNGC HRLALEKNER DNTMQEVLIQ QMASSLTKDS KFTAALAAAI
301: SGRLMEQSRT
101: KRKQDPDEFL GFPIGLSSGK TENSSSNEDH HHHHQQHEQK NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLTVKDGFQ WRKYGQKVTR DNPSPRAYFR
201: CSFAPSCPVK KKVQRSAEDP SLLVATYEGT HNHLGPNASE GDATSQGGSS TVTLDLVNGC HRLALEKNER DNTMQEVLIQ QMASSLTKDS KFTAALAAAI
301: SGRLMEQSRT
Arabidopsis Description
WRKY18WRKY like transcription factor [Source:UniProtKB/TrEMBL;Acc:Q0WTZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.