CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 5
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
PTS1:	peroxisome
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04741
KXG20269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	EES04741	AT4G38130.1	18776063
AT5G01900.1	KXG20269	AT4G38130.1	18776063
AT5G22570.1	EES04741	AT4G38130.1	18776063
AT5G22570.1	KXG20269	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023332_P001	Maize	nucleus	39.0	41.05
Os11t0117600-00	Rice	nucleus	17.3	38.31
Zm00001d044680_P001	Maize	nucleus	37.24	35.18
TraesCS5D01G145800.1	Wheat	nucleus	31.09	31.74
TraesCS5B01G145300.1	Wheat	nucleus	31.09	31.45
TraesCS5A01G146500.1	Wheat	nucleus	30.21	30.47
HORVU5Hr1G046390.2	Barley	nucleus, plastid	31.09	28.42
EES09141	Sorghum	nucleus	19.94	25.0
OQU78675	Sorghum	nucleus	14.96	23.72
EES09138	Sorghum	nucleus	19.94	23.53
EES09137	Sorghum	nucleus	17.01	21.4
EES16607	Sorghum	nucleus	15.54	19.85
CDY37614	Canola	nucleus	11.44	19.7
CDY37613	Canola	nucleus	11.44	19.7
Bra008454.1-P	Field mustard	nucleus	11.14	19.19
AT1G66560.1	Thale cress	nucleus	13.2	18.07
AT5G01900.1	Thale cress	nucleus	13.49	17.49
AT1G66600.1	Thale cress	nucleus	12.32	17.43
CDY63078	Canola	nucleus	12.9	17.05
CDY12284	Canola	nucleus	12.61	16.67
Bra023211.1-P	Field mustard	nucleus	12.61	16.67
OQU78673	Sorghum	nucleus	11.44	16.6
AT1G66550.1	Thale cress	nucleus	12.32	16.54
CDY71652	Canola	nucleus	12.32	16.28
CDY38684	Canola	nucleus	12.32	16.28
CDY04820	Canola	nucleus	12.32	16.09
Bra008459.1-P	Field mustard	nucleus	12.02	15.89
AT1G80590.1	Thale cress	nucleus	10.56	15.32
CDY37611	Canola	nucleus	10.85	14.92
Bra008456.1-P	Field mustard	nucleus	10.85	14.92
Bra020197.1-P	Field mustard	nucleus	12.02	14.64
CDY09147	Canola	nucleus	11.73	14.34
Bra002421.1-P	Field mustard	nucleus	12.02	14.24
CDY26943	Canola	nucleus	12.02	14.24
AT5G22570.1	Thale cress	nucleus	12.02	14.19
Bra028918.1-P	Field mustard	nucleus	11.73	13.79
Bra020196.1-P	Field mustard	nucleus	11.44	13.73
CDY71866	Canola	nucleus	11.44	13.73
CDY35701	Canola	nucleus	11.14	13.33
CDY35694	Canola	nucleus	10.26	11.48

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8074851	UniProt:C5YRA1	EnsemblPlants:EES15637	ProteinID:EES15637
ProteinID:EES15637.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF36
SMART:SM00774	EnsemblPlantsGene:SORBI_3008G028600	SUPFAM:SSF118290	UniParc:UPI0001A884F6	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002441799.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:2541872..2544263

Molecular Weight (calculated)

36204.9 Da

IEP (calculated)

5.227

GRAVY (calculated)

-0.503

Length

341 amino acids

Sequence
(BLAST)

001: MALQVVGREE ELLAQLRALL FLPSPAAAAT PAAPAAVKVE SAGGGSLMGS GGGGRRRRRL QGSKRDRDDD SKAKDEQNQE ERAAATEPRH YSPPPCKRRK
101: KKQQSKSKSL VTSVPDFDGY QWRKYGQKQI EGAMYPRSYY RCTRSAEQGC AAKRTVQRND DDGGGAAAAP EYTVVYVSEH TCTANDSLEA PVILETTTTV
201: VAPSNSAATA NTTTYTDSIV VPTMSDHGSC STITITTGTE SPAISGDDIT CWSSTSGGAS SSDYNYADDD YYYDCGGLFG AAVHGGGWAT GPADASSSSS
301: LLEMEDMNGP IRSPVHVPAV GWTIIDPLLL QLVNEPAVCH F

Best Arabidopsis Sequence Match ( AT2G40750.1 )
(BLAST)

001: MDSNSNNTKS IKRKVVDQLV EGYEFATQLQ LLLSHQHSNQ YHIDETRLVS GSGSVSGGPD PVDELMSKIL GSFHKTISVL DSFDPVAVSV PIAVEGSWNA
101: SCGDDSATPV SCNGGDSGES KKKRLGVGKG KRGCYTRKTR SHTRIVEAKS SEDRYAWRKY GQKEILNTTF PRSYFRCTHK PTQGCKATKQ VQKQDQDSEM
201: FQITYIGYHT CTANDQTHAK TEPFDQEIIM DSEKTLAAST AQNHVNAMVQ EQENNTSSVT AIDAGMVKEE QNNNGDQSKD YYEGSSTGED LSLVWQETMM
301: FDDHQNHYYC GETSTTSHQF GFIDNDDQFS SFFDSYCADY ERTSAM

Arabidopsis Description

WRKY54Probable WRKY transcription factor 54 [Source:UniProtKB/Swiss-Prot;Acc:Q93WU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.