Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G01900.1 | CDY21119 | AT4G38130.1 | 18776063 |
| AT5G01900.1 | CDY30008 | AT4G38130.1 | 18776063 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12284 | Canola | nucleus | 80.08 | 81.01 |
| CDY63078 | Canola | nucleus | 78.16 | 79.07 |
| Bra028918.1-P | Field mustard | nucleus | 85.44 | 76.9 |
| AT5G01900.1 | Thale cress | nucleus | 63.98 | 63.5 |
| HORVU2Hr1G098280.1 | Barley | nucleus | 6.13 | 35.56 |
| CDY71652 | Canola | nucleus | 32.18 | 32.56 |
| CDY38684 | Canola | nucleus | 31.8 | 32.17 |
| CDY71866 | Canola | nucleus | 34.1 | 31.34 |
| CDY37611 | Canola | nucleus | 28.35 | 29.84 |
| CDY37613 | Canola | nucleus | 22.61 | 29.8 |
| CDY37614 | Canola | nucleus | 22.61 | 29.8 |
| CDY09147 | Canola | nucleus | 30.65 | 28.67 |
| CDY26943 | Canola | nucleus | 31.42 | 28.47 |
| HORVU2Hr1G003310.1 | Barley | nucleus | 7.28 | 26.03 |
| CDY35701 | Canola | nucleus | 28.35 | 25.96 |
| CDY35694 | Canola | nucleus | 29.89 | 25.57 |
| OQU78675 | Sorghum | nucleus | 17.24 | 20.93 |
| TraesCS2A01G019300.1 | Wheat | nucleus | 19.16 | 19.92 |
| Os12t0116600-01 | Rice | nucleus | 17.62 | 19.91 |
| TraesCS5A01G146600.1 | Wheat | nucleus | 20.31 | 19.78 |
| TraesCS5B01G145400.1 | Wheat | nucleus | 19.16 | 19.01 |
| Os12t0116700-01 | Rice | nucleus | 22.99 | 18.69 |
| EES09138 | Sorghum | nucleus | 20.69 | 18.69 |
| Zm00001d044682_P001 | Maize | plastid | 18.01 | 18.5 |
| Os11t0117400-00 | Rice | nucleus | 19.16 | 18.45 |
| TraesCS2A01G021400.1 | Wheat | nucleus | 9.58 | 18.38 |
| EES09141 | Sorghum | nucleus | 19.16 | 18.38 |
| TraesCS2D01G051000.1 | Wheat | nucleus | 17.24 | 18.22 |
| Os11t0117500-01 | Rice | nucleus | 22.22 | 18.12 |
| Zm00001d005056_P001 | Maize | nucleus | 20.69 | 17.94 |
| TraesCS5D01G145700.1 | Wheat | nucleus | 18.01 | 17.8 |
| TraesCS2A01G052100.1 | Wheat | nucleus | 17.24 | 17.72 |
| Zm00001d023336_P001 | Maize | nucleus | 19.16 | 17.48 |
| EES09137 | Sorghum | nucleus | 18.01 | 17.34 |
| HORVU5Hr1G046430.1 | Barley | nucleus | 21.46 | 17.18 |
| TraesCS5D01G145600.1 | Wheat | nucleus | 20.69 | 17.09 |
| TraesCS5B01G145500.1 | Wheat | nucleus | 20.69 | 17.09 |
| TraesCS5A01G146700.1 | Wheat | nucleus | 20.69 | 17.03 |
| Zm00001d052358_P001 | Maize | nucleus | 19.54 | 16.72 |
| EES16607 | Sorghum | nucleus | 16.86 | 16.48 |
| OQU78673 | Sorghum | nucleus | 13.41 | 14.89 |
| Zm00001d023332_P001 | Maize | nucleus | 18.39 | 14.81 |
| TraesCS5D01G145800.1 | Wheat | nucleus | 18.01 | 14.07 |
| TraesCS5B01G145300.1 | Wheat | nucleus | 18.01 | 13.95 |
| TraesCS5A01G146500.1 | Wheat | nucleus | 17.62 | 13.61 |
| HORVU5Hr1G046390.2 | Barley | nucleus, plastid | 18.77 | 13.14 |
| Os11t0117600-00 | Rice | nucleus | 7.66 | 12.99 |
| Zm00001d044680_P001 | Maize | nucleus | 17.62 | 12.74 |
| EES15637 | Sorghum | nucleus | 16.09 | 12.32 |
| TraesCS2D01G051500.1 | Wheat | cytosol | 6.9 | 9.33 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078ESA9 | EnsemblPlants:CDY04820 | ProteinID:CDY04820 | ProteinID:CDY04820.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00119527001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31282 |
| PANTHER:PTHR31282:SF37 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EEE53A | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaAnng00020D
Coordinates
chrLK031958:+:15840..16970
Molecular Weight (calculated)
30020.7 Da
IEP (calculated)
6.792
GRAVY (calculated)
-1.006
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSCQQKAME TLLHGHGCAN QLKLIMDHAK SDSSMEREDL AKSVLHCFSD ALAILIDTYD HHQGDQSNNS SPQDASPVLE NSRKPLHKRG RKTSVAESSD
101: YRRHESPNPI YHDGFLWRKY GQKQIKESNH QRSYYKCAYT KDQNCEAKKQ VQMIQNNPPL YSTTYFGHHT CQLHQAYATF PGDTSDPQDS HMIRFDHPDS
201: SIHQHQNQSQ NQIIYLKDEN MMMLPDKSEE WSSPSQWMSS EVAHAVEAFG FNPFRTSSDL S
101: YRRHESPNPI YHDGFLWRKY GQKQIKESNH QRSYYKCAYT KDQNCEAKKQ VQMIQNNPPL YSTTYFGHHT CQLHQAYATF PGDTSDPQDS HMIRFDHPDS
201: SIHQHQNQSQ NQIIYLKDEN MMMLPDKSEE WSSPSQWMSS EVAHAVEAFG FNPFRTSSDL S
001: MNSCQQKAME KLLHGHGCAN QLLIMDQTES DSSMEREDLA KSVLHCFSDA LSILIDTNDH QDDQSNNSSP QDSSPVLESS RKPLHKRGRK TSMAESSDYH
101: RHESSTPIYH DGFLWRKYGQ KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHICQ LHQAYATFPI DTSDFEEHEG SHMIRFGHPN
201: ISFSSSTSNL RQHQNHQDRI KDEYMKPVIA EDWSPSQWMS SEVALAVEAF EFNPFWTSHD LSS
101: RHESSTPIYH DGFLWRKYGQ KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHICQ LHQAYATFPI DTSDFEEHEG SHMIRFGHPN
201: ISFSSSTSNL RQHQNHQDRI KDEYMKPVIA EDWSPSQWMS SEVALAVEAF EFNPFWTSHD LSS
Arabidopsis Description
WRKY62WRKY62 [Source:UniProtKB/TrEMBL;Acc:A0A178U8T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.