Factsheet for TraesCS2A01G021400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G184100.2
TraesCS6B01G212600.3
TraesCS6D01G171000.1
TraesCS7A01G365600.3
TraesCS7B01G261800.1
TraesCS7D01G356800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G01900.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7D01G356800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G22570.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7D01G356800.1	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G098280.1	Barley	nucleus	26.47	80.0
HORVU2Hr1G003310.1	Barley	nucleus	30.88	57.53
TraesCS2A01G019300.1	Wheat	nucleus	81.62	44.22
TraesCS2A01G052100.1	Wheat	nucleus	61.76	33.07
TraesCS5A01G146600.1	Wheat	nucleus	51.47	26.12
EES09141	Sorghum	nucleus	47.06	23.53
TraesCS2D01G051500.1	Wheat	cytosol	33.09	23.32
Zm00001d005056_P001	Maize	nucleus	44.85	20.27
TraesCS5A01G146700.1	Wheat	nucleus	32.35	13.88
TraesCS5A01G146500.1	Wheat	nucleus	27.94	11.24
Bra008459.1-P	Field mustard	nucleus	20.59	10.85
CDY71652	Canola	nucleus	20.59	10.85
AT1G66560.1	Thale cress	nucleus	19.85	10.84
CDY12284	Canola	nucleus	19.85	10.47
Bra023211.1-P	Field mustard	nucleus	19.85	10.47
CDY38684	Canola	nucleus	19.85	10.47
CDY63078	Canola	nucleus	19.85	10.47
Bra008454.1-P	Field mustard	nucleus	14.71	10.1
CDY37613	Canola	nucleus	14.71	10.1
CDY37614	Canola	nucleus	14.71	10.1
Bra008456.1-P	Field mustard	nucleus	18.38	10.08
CDY37611	Canola	nucleus	18.38	10.08
Bra020196.1-P	Field mustard	nucleus	20.59	9.86
CDY71866	Canola	nucleus	20.59	9.86
AT1G66550.1	Thale cress	nucleus	18.38	9.84
AT1G80590.1	Thale cress	nucleus	16.91	9.79
AT5G22570.1	Thale cress	nucleus	20.59	9.69
CDY04820	Canola	nucleus	18.38	9.58
AT1G66600.1	Thale cress	nucleus	16.91	9.54
CDY09147	Canola	nucleus	19.12	9.32
AT5G01900.1	Thale cress	nucleus	17.65	9.13
CDY26943	Canola	nucleus	19.12	9.03
Bra002421.1-P	Field mustard	nucleus	19.12	9.03
Bra028918.1-P	Field mustard	nucleus	19.12	8.97
Bra020197.1-P	Field mustard	nucleus	18.38	8.93
CDY35701	Canola	nucleus	17.65	8.42
CDY35694	Canola	nucleus	18.38	8.2

Protein Annotations

Gene3D:2.20.25.80	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31282	PANTHER:PTHR31282:SF25	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS2A01G021400	EnsemblPlants:TraesCS2A01G021400.1	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:10216981..10217832

Molecular Weight (calculated)

15332.4 Da

IEP (calculated)

10.444

GRAVY (calculated)

-0.526

Length

136 amino acids

Sequence
(BLAST)

001: MDALLRRQQE LVIQLRALVL PALRDADSRS ADLAVDLFDD MIDCITGVIS RLQSITTAGG EPAVAFILGN NISNGADEGQ EKKPVISNAG QKRRRNNEKR
101: SRSLVTIVPH YDGRHWRKYG QKNIKGRQHA RYLYFS

Best Arabidopsis Sequence Match ( AT3G58710.2 )
(BLAST)

001: MHRRAAIQES DDEEDETYND VVPESPSSCE DSKISKPTPK KRRNVEKRVV SVPIADVEGS KSRGEVYPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG
101: CPARKQVERS RVDPSKLMIT YACDHNHPFP SSSANTKSHH RSSVVLKTAK KEEEYEEEEE ELTVTAAEEP PAGLDLSHVD SPLLLGGCYS EIGEFGWFYD
201: ASISSSSGSS NFLDVTLERG FSVGQEEDES LFGDLGDLPD CASVFRRGTV ATEEQHRRCD FGAIPFCDSS R

Arabidopsis Description

WRKY69WRKY69 [Source:UniProtKB/TrEMBL;Acc:A0A178V7K8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.