Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G038710.1 | |
| HORVU7Hr1G085870.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G098280.1 | Barley | nucleus | 53.42 | 86.67 |
| TraesCS2A01G021400.1 | Wheat | nucleus | 57.53 | 30.88 |
| TraesCS2A01G019300.1 | Wheat | nucleus | 56.16 | 16.33 |
| TraesCS2A01G052100.1 | Wheat | nucleus | 54.79 | 15.75 |
| TraesCS2D01G051000.1 | Wheat | nucleus | 52.05 | 15.38 |
| EES09141 | Sorghum | nucleus | 49.32 | 13.24 |
| Zm00001d005056_P001 | Maize | nucleus | 47.95 | 11.63 |
| CDY37614 | Canola | nucleus | 23.29 | 8.59 |
| AT1G80590.1 | Thale cress | nucleus | 26.03 | 8.09 |
| Bra008454.1-P | Field mustard | nucleus | 21.92 | 8.08 |
| CDY37613 | Canola | nucleus | 21.92 | 8.08 |
| AT1G66560.1 | Thale cress | nucleus | 27.4 | 8.03 |
| AT1G66600.1 | Thale cress | nucleus | 24.66 | 7.47 |
| CDY71866 | Canola | nucleus | 28.77 | 7.39 |
| Bra020196.1-P | Field mustard | nucleus | 28.77 | 7.39 |
| Bra008459.1-P | Field mustard | nucleus | 26.03 | 7.36 |
| CDY71652 | Canola | nucleus | 26.03 | 7.36 |
| Bra023211.1-P | Field mustard | nucleus | 26.03 | 7.36 |
| HORVU5Hr1G046430.1 | Barley | nucleus | 32.88 | 7.36 |
| CDY04820 | Canola | nucleus | 26.03 | 7.28 |
| CDY09147 | Canola | nucleus | 27.4 | 7.17 |
| AT1G66550.1 | Thale cress | nucleus | 24.66 | 7.09 |
| CDY63078 | Canola | nucleus | 24.66 | 6.98 |
| CDY12284 | Canola | nucleus | 24.66 | 6.98 |
| AT5G22570.1 | Thale cress | nucleus | 27.4 | 6.92 |
| CDY35701 | Canola | nucleus | 26.03 | 6.67 |
| CDY38684 | Canola | nucleus | 23.29 | 6.59 |
| Bra028918.1-P | Field mustard | nucleus | 26.03 | 6.55 |
| Bra020197.1-P | Field mustard | nucleus | 24.66 | 6.43 |
| CDY26943 | Canola | nucleus | 24.66 | 6.25 |
| Bra002421.1-P | Field mustard | nucleus | 24.66 | 6.25 |
| HORVU5Hr1G046390.2 | Barley | nucleus, plastid | 31.51 | 6.17 |
| AT5G01900.1 | Thale cress | nucleus | 21.92 | 6.08 |
| CDY37611 | Canola | nucleus | 20.55 | 6.05 |
| Bra008456.1-P | Field mustard | nucleus | 20.55 | 6.05 |
| CDY35694 | Canola | nucleus | 24.66 | 5.9 |
| TraesCS2D01G051500.1 | Wheat | cytosol | 12.33 | 4.66 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | UniProt:A0A287GX56 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:HORVU2Hr1G003310 | EnsemblPlants:HORVU2Hr1G003310.1 | InterPro:IPR003657 |
| InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF25 | SUPFAM:SSF118290 |
| UniParc:UPI000B46E2D5 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:7222801..7223226
Molecular Weight (calculated)
8834.4 Da
IEP (calculated)
10.864
GRAVY (calculated)
-1.168
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: IFNRFGWRAD NRWLHASIDA EAGGSFPPYK KMRNNEKRSR SLVTIVPHYD GHHWRKYGQK NINGRQHARY IYY
001: MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS
Arabidopsis Description
WRKY55WRKY DNA-binding protein 55 [Source:TAIR;Acc:AT2G40740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.