Factsheet for HORVU5Hr1G046390.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G038710.1
HORVU7Hr1G085870.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	HORVU6Hr1G038710.1	AT4G38130.1	18776063
AT5G01900.1	HORVU7Hr1G085870.2	AT4G38130.1	18776063
AT5G22570.1	HORVU6Hr1G038710.1	AT4G38130.1	18776063
AT5G22570.1	HORVU7Hr1G085870.2	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G145300.1	Wheat	nucleus	80.97	89.61
TraesCS5D01G145800.1	Wheat	nucleus	79.89	89.22
TraesCS5A01G146500.1	Wheat	nucleus	74.53	82.25
HORVU2Hr1G098280.1	Barley	nucleus	5.36	44.44
Os11t0117600-00	Rice	nucleus	15.82	38.31
HORVU2Hr1G003310.1	Barley	nucleus	6.17	31.51
Zm00001d023332_P001	Maize	nucleus	27.35	31.48
EES15637	Sorghum	nucleus	28.42	31.09
Zm00001d044680_P001	Maize	nucleus	25.47	26.32
HORVU5Hr1G046430.1	Barley	nucleus	18.23	20.86
CDY12284	Canola	nucleus	13.94	20.16
Bra023211.1-P	Field mustard	nucleus	13.67	19.77
CDY63078	Canola	nucleus	13.67	19.77
CDY04820	Canola	nucleus	13.14	18.77
CDY71652	Canola	nucleus	12.87	18.6
AT1G66560.1	Thale cress	nucleus	12.06	18.07
AT5G01900.1	Thale cress	nucleus	12.6	17.87
Bra008459.1-P	Field mustard	nucleus	12.33	17.83
CDY37613	Canola	nucleus	9.38	17.68
CDY37614	Canola	nucleus	9.38	17.68
AT1G80590.1	Thale cress	nucleus	10.99	17.45
AT1G66600.1	Thale cress	nucleus	11.26	17.43
AT1G66550.1	Thale cress	nucleus	11.8	17.32
Bra008454.1-P	Field mustard	nucleus	9.12	17.17
CDY38684	Canola	nucleus	11.8	17.05
Bra028918.1-P	Field mustard	nucleus	13.14	16.9
Bra002421.1-P	Field mustard	nucleus	11.8	15.28
CDY37611	Canola	nucleus	9.92	14.92
Bra008456.1-P	Field mustard	nucleus	9.92	14.92
CDY71866	Canola	nucleus	10.99	14.44
Bra020196.1-P	Field mustard	nucleus	10.99	14.44
Bra020197.1-P	Field mustard	nucleus	10.72	14.29
CDY09147	Canola	nucleus	10.46	13.98
CDY26943	Canola	nucleus	10.72	13.89
AT5G22570.1	Thale cress	nucleus	10.72	13.84
CDY35701	Canola	nucleus	10.46	13.68
CDY35694	Canola	nucleus	9.92	12.13

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A287R1T5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU5Hr1G046390	EnsemblPlants:HORVU5Hr1G046390.2	InterPro:IPR003657	InterPro:IPR036576
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF36	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI000B479974	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr5H:+:360368583..360370568

Molecular Weight (calculated)

40575.8 Da

IEP (calculated)

7.888

GRAVY (calculated)

-0.704

Length

373 amino acids

Sequence
(BLAST)

001: QPTSFLFTSS LSDLSSQRHT HTRSACRTYC RAIRTEMQRS RGCAPGGEHG WAAADGGGMQ LQRRERELVA QLHELLYPST SPSRSGASSC SGLAAELYWE
101: HGSSQVKATA SCGGGKRRGG RKRAREDERH EEGQGQRAGA ATATKATTRC RRKKLGTTTR TLVTTVPDFD GYQWRKYGQK QIEAAMHPRS YYRCTNSTNQ
201: GCPAKRTVQR NDDDGNDNGR PKYTVVYISE HSCKSTESAA VPVILETTVR ADTAAAPDVD VVPGSSSSAI SSETQSPASS SDLTWSSGGS EDGANPPPRA
301: RDDYSRLFAI EDECWWWNPS PAPAVAPALL QEMDFDGPIR SPVHVAAADG SWINDLFVNE PPFVLNSCHL FAL

Best Arabidopsis Sequence Match ( AT2G40740.1 )
(BLAST)

001: MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS

Arabidopsis Description

WRKY55WRKY DNA-binding protein 55 [Source:TAIR;Acc:AT2G40740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.